smirarab / 1kpView external linksLinks
Data and scripts used in the oneKP capstone analyses
☆13Apr 5, 2022Updated 3 years ago
Alternatives and similar repositories for 1kp
Users that are interested in 1kp are comparing it to the libraries listed below
Sorting:
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 8 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- The Leipzig Catalogue of Vascular Plants☆17Nov 7, 2022Updated 3 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆16May 27, 2024Updated last year
- R package to extract data from Global Inventory of Floras and Traits (GIFT)☆18Oct 13, 2025Updated 4 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated this week
- ☆18Dec 5, 2020Updated 5 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Jul 30, 2020Updated 5 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆19Feb 26, 2024Updated last year
- scripts☆20Nov 2, 2018Updated 7 years ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Reconstruct Ancestral State in Phylogenies☆27May 21, 2024Updated last year
- Unraveling the evolutionary tapestry☆24Jan 28, 2026Updated 2 weeks ago
- Gallery and R code for published scientific figures☆25Apr 26, 2021Updated 4 years ago
- spruceup☆25Aug 15, 2025Updated 5 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Recovering genes from targeted sequence capture data☆131Jan 9, 2026Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Feb 2, 2026Updated last week
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 4 years ago
- ChIP-seq and ATAC-seq analysis☆13Jun 17, 2024Updated last year
- A deep learning framework for essential gene prediction☆12Aug 17, 2020Updated 5 years ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jan 2, 2026Updated last month
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆10Apr 25, 2024Updated last year
- Scripting analyses of genomes in Ensembl Plants☆42Jan 1, 2026Updated last month
- Accurate Species TRee ALgorithm☆271Apr 1, 2024Updated last year
- ☆11Nov 12, 2020Updated 5 years ago
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2025.☆14Aug 7, 2025Updated 6 months ago
- an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"☆10Mar 18, 2019Updated 6 years ago
- 中国植物图像库爬虫☆12Jul 22, 2018Updated 7 years ago
- Vignettes for Cardinal3 paper☆10Feb 20, 2023Updated 2 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- ☆11May 10, 2025Updated 9 months ago