smirarab / 1kp
Data and scripts used in the oneKP capstone analyses
☆12Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for 1kp
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆44Updated 5 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- ☆16Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- ☆38Updated last year
- Tutorial about R package PopGenome☆40Updated 5 years ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆31Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆42Updated 8 months ago
- Documentation for Evolview☆26Updated 2 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆26Updated 3 weeks ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆13Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆34Updated 6 months ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- ☆21Updated 10 years ago
- MitoDNA extending assembler from NGS data☆20Updated 10 months ago
- ☆32Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Presentations from the course☆36Updated last year
- ☆9Updated 8 years ago
- paml documentation and tutorials☆47Updated last year
- Sorting and subsampling phylogenomic datasets☆20Updated 9 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 10 months ago
- Genome Annotation Pipeline☆32Updated 3 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Phylogenomics from Low-coverage Whole-genome Sequencing☆36Updated 4 years ago