lauramarie99 / ProtDesign2Links
ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
☆13Updated 3 months ago
Alternatives and similar repositories for ProtDesign2
Users that are interested in ProtDesign2 are comparing it to the libraries listed below
Sorting:
- ☆9Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 2 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆17Updated 4 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 3 months ago
- ☆13Updated 2 months ago
- ☆13Updated last year
- A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.☆11Updated last month
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- Making Protein folding accessible to all!☆22Updated last year
- bakerlab pymol scripts☆23Updated 5 years ago
- ☆18Updated 7 months ago
- Code for ApoDock☆20Updated last month
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- DyNoPy☆11Updated 9 months ago
- PPI version of Pythia☆11Updated 6 months ago
- ☆26Updated 3 weeks ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆18Updated last year
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆18Updated 5 months ago
- A Python framework for the rapid modeling of glycans☆15Updated 4 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆33Updated 10 months ago
- ☆27Updated 9 months ago
- Quick mapping of Uniprot sequences to PDB structures☆31Updated 2 months ago
- ☆15Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- ☆35Updated 2 months ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆19Updated 8 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆54Updated last month
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated 2 months ago
- ☆18Updated last month
- ☆27Updated 4 months ago