lauramarie99 / ProtDesign2Links
ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
☆18Updated 5 months ago
Alternatives and similar repositories for ProtDesign2
Users that are interested in ProtDesign2 are comparing it to the libraries listed below
Sorting:
- ☆9Updated last week
- scripts to find PBD structures for cancer driver proteins☆31Updated 5 months ago
- bakerlab pymol scripts☆24Updated 5 years ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆32Updated last week
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- ☆36Updated last month
- ☆9Updated 2 years ago
- ☆13Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 4 months ago
- ☆28Updated 6 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 6 months ago
- ☆23Updated 2 months ago
- DyNoPy☆11Updated 11 months ago
- Modelling protein conformational landscape with Alphafold☆51Updated last week
- ☆13Updated 4 months ago
- Extension of ThermoMPNN for double mutant predictions☆41Updated last week
- A Python framework for the rapid modeling of glycans☆15Updated 6 months ago
- ☆27Updated last year
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- ☆44Updated 10 months ago
- ☆48Updated last week
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model☆13Updated 2 weeks ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- Some scripts that I keep using over and over.☆19Updated last month
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆66Updated this week
- ☆15Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆22Updated 4 months ago
- ☆15Updated 7 months ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year