Energy-guided binder design pipeline built on BindCraft
☆16Jun 6, 2025Updated 9 months ago
Alternatives and similar repositories for BECraft
Users that are interested in BECraft are comparing it to the libraries listed below
Sorting:
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…☆65Feb 3, 2026Updated last month
- Predicting mutational effects on protein binding from folding energy. ICML 2025.☆39Aug 4, 2025Updated 7 months ago
- A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD☆15Mar 20, 2025Updated 11 months ago
- A drop-in replacement for Rosetta Relax☆27Jan 30, 2026Updated last month
- ☆36Mar 19, 2025Updated 11 months ago
- ☆57May 29, 2025Updated 9 months ago
- ☆21Oct 9, 2025Updated 4 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Nov 5, 2025Updated 4 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆38Jan 2, 2026Updated 2 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆43Dec 16, 2024Updated last year
- ☆22Dec 11, 2024Updated last year
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆38Nov 25, 2025Updated 3 months ago
- ☆27Aug 8, 2025Updated 6 months ago
- PPI version of Pythia☆27Sep 12, 2025Updated 5 months ago
- ☆21Dec 3, 2024Updated last year
- A program analyzing 3D protein structures from PDB to generate 2D binding motifs☆15Jul 18, 2021Updated 4 years ago
- ☆93Dec 30, 2025Updated 2 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆96Dec 10, 2025Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 4 months ago
- ☆31Mar 20, 2025Updated 11 months ago
- ☆135Jun 3, 2025Updated 9 months ago
- ☆23Jun 10, 2025Updated 8 months ago
- ☆21Dec 20, 2024Updated last year
- mdml: Deep Learning for Molecular Simulations☆52May 17, 2025Updated 9 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆84Dec 3, 2025Updated 3 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆49Mar 21, 2024Updated last year
- ☆79Oct 23, 2025Updated 4 months ago
- Lightweight induced fit docking☆21May 22, 2023Updated 2 years ago
- Weighted Ensemble Data Analysis and Plotting☆26Dec 11, 2025Updated 2 months ago
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆104May 25, 2025Updated 9 months ago
- A universal ML model to predict molecular dynamics trajectories with long time steps☆36Feb 24, 2026Updated last week
- Alphafold3 using mmseqs2-gpu for sequence query☆37Feb 9, 2026Updated 3 weeks ago
- Making Protein folding accessible to all!☆25Jan 11, 2024Updated 2 years ago
- ☆24Dec 2, 2024Updated last year
- ☆32Updated this week
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆40Jan 21, 2026Updated last month
- Official repository of GENzyme☆62Nov 29, 2024Updated last year