beckham-lab / EpHod
Deep learning prediction of enzyme optimum pH
☆22Updated 9 months ago
Related projects: ⓘ
- A domain parser for Alphafold models☆29Updated 9 months ago
- Detection of remote homology by comparison of protein language model representations☆41Updated this week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆46Updated last month
- ☆28Updated 3 weeks ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆44Updated 5 months ago
- ☆44Updated 3 months ago
- ☆20Updated last year
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆31Updated this week
- ☆37Updated 3 weeks ago
- ☆62Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆26Updated 6 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆71Updated 5 months ago
- RNA Multiple Sequence Alignment☆24Updated last year
- ☆28Updated 11 months ago
- ☆21Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆58Updated 2 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆16Updated last month
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆18Updated 3 years ago
- Code for holographic machine learning of proteins☆19Updated last year
- ☆19Updated last year
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆14Updated 3 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆59Updated 2 weeks ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- DeepECtransformer☆20Updated 11 months ago
- Graph Network for protein-protein interface including language model features☆25Updated 5 months ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆11Updated last month
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆28Updated 2 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆57Updated 3 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆16Updated last year