Complete saturation mutagenesis of a protein using ESM
☆16Feb 20, 2024Updated 2 years ago
Alternatives and similar repositories for ESM-Scan
Users that are interested in ESM-Scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A program fror inter-protein contact prediction from structures of interacting proteins☆20Jun 1, 2024Updated last year
- Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory☆11Apr 6, 2022Updated 3 years ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆16Dec 21, 2025Updated 3 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 4 months ago
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 3 years ago
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- ☆21Oct 31, 2024Updated last year
- Alphafold3 using mmseqs2-gpu for sequence query☆37Feb 9, 2026Updated last month
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆29Jan 17, 2024Updated 2 years ago
- ☆24Dec 2, 2024Updated last year
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…☆28Aug 26, 2025Updated 6 months ago
- Predicting high-fitness mutations based on protein inverse folding models☆75Sep 30, 2025Updated 5 months ago
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆56Oct 17, 2025Updated 5 months ago
- ☆16Jan 19, 2026Updated 2 months ago
- [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…☆29Jan 28, 2026Updated last month
- Making Protein Language Modeling Accessible to All Biologists☆158Mar 17, 2026Updated last week
- Protocols for running MD simulations in Gromacs☆10Jun 18, 2024Updated last year
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆14Nov 1, 2023Updated 2 years ago
- ☆18Dec 22, 2017Updated 8 years ago
- ☆130Mar 10, 2026Updated 2 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆81Oct 24, 2025Updated 5 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 6 months ago
- ☆20Sep 26, 2025Updated 5 months ago
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- ☆21Sep 1, 2025Updated 6 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- Public Release of ProGen3 family of Models☆104Jul 21, 2025Updated 8 months ago
- Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning☆18Nov 21, 2025Updated 4 months ago
- Utilities to assist with Amber Molecular Dynamics structure preparation and MMPBSA.py energy methods☆19Oct 31, 2019Updated 6 years ago
- A 2D particle picker for cryoEM micrographs☆10Nov 26, 2024Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Sep 9, 2025Updated 6 months ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆16Jul 6, 2025Updated 8 months ago
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- Ramirez Lab WIKI, where you could find Tutorials, Script Library, Gallery, FAQ, and a little bit more☆13Sep 11, 2024Updated last year
- ☆27Aug 8, 2025Updated 7 months ago
- Making Protein folding accessible to all!☆26Updated this week
- ☆30Aug 27, 2025Updated 6 months ago