A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
☆22Oct 26, 2020Updated 6 years ago
Alternatives and similar repositories for bcfanno
Users that are interested in bcfanno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 3 months ago
- Accurate estimation of off-target editing activity from comparative NGS data☆13Jan 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 3 years ago
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- likelihood calculations over a tree to support ancient DNA Y chr analysis and more☆11Jul 4, 2023Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- ☆13Sep 5, 2017Updated 9 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 15 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A library and command-line tool to parse math expressions☆15Nov 30, 2024Updated last year
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jul 26, 2026Updated 3 months ago
- UC Berkeley PhD thesis template☆11Jun 5, 2016Updated 10 years ago
- ☆15Feb 25, 2017Updated 9 years ago
- ☆16Jul 9, 2026Updated 4 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 7 months ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Add multiple thread function for genome comparison☆17Sep 29, 2021Updated 5 years ago
- All UCSC Genome Browser source code that is under an open source license, mostly file format converters, command line tools and C librari…☆14Dec 15, 2025Updated 10 months ago
- Conta is an R package to detect cross contamination and source of contamination☆11Feb 25, 2020Updated 6 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- baidu netdisk command-line api☆11Jul 18, 2023Updated 3 years ago
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago
- TreeBeST: Tree Building guided by Species Tree☆14Feb 17, 2011Updated 15 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bedfile perturbation tool☆17Mar 6, 2026Updated 8 months ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Oct 14, 2026Updated 3 weeks ago
- NCBI taxonomy tree in-memory mapping☆17Oct 20, 2022Updated 4 years ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- Build haplotye and generate figures☆20Nov 4, 2025Updated last year
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
Are these results useful?