Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data
☆13Jul 6, 2021Updated 5 years ago
Alternatives and similar repositories for cFIT
Users that are interested in cFIT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15Oct 15, 2026Updated 2 weeks ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 4 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆17Aug 31, 2026Updated 2 months ago
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- A web app to view and analyze single cell RNAseq data with Seurat☆10Mar 25, 2023Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Sep 3, 2025Updated last year
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Variational autoencoder for single-cell integration and transfer learning.☆12Jul 23, 2026Updated 3 months ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 8 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- ☆44Apr 5, 2021Updated 5 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆13Aug 26, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆37Jan 4, 2022Updated 4 years ago
- ☆18May 30, 2022Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆40Aug 10, 2023Updated 3 years ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.☆11Nov 14, 2024Updated last year
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- mbImpute: an accurate and robust imputation method for microbiome data☆13Aug 19, 2021Updated 5 years ago
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 4 years ago
- Repository for Fall 2019 incarnation of Bayesian Statistics at Carleton College.☆12Mar 16, 2021Updated 5 years ago
- ☆12Oct 18, 2024Updated 2 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago