hochwagenlab / hwglabr2Links
Collection of R functions used in the Hochwagen Lab
☆12Updated 5 months ago
Alternatives and similar repositories for hwglabr2
Users that are interested in hwglabr2 are comparing it to the libraries listed below
Sorting:
- Pairwise Hierarchical Model☆20Updated 3 years ago
- scover☆24Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆12Updated 6 years ago
- ☆23Updated last year
- ☆18Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- ☆25Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- ☆19Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆29Updated 5 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- binned motif enrichment analysis and visualisation☆44Updated this week
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests☆13Updated 8 months ago