hochwagenlab / hwglabr2
Collection of R functions used in the Hochwagen Lab
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for hwglabr2
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆19Updated 11 months ago
- ☆11Updated 5 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated 3 weeks ago
- ChromSCape☆14Updated 10 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆15Updated 5 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 5 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆15Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- ☆17Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- An R package to interpret biological trends from DNA methylation data☆16Updated 2 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆17Updated 2 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Updated 5 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Chromatin States Map in mouse embryonic stem cell☆13Updated 6 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- ☆17Updated 5 years ago