Wrapper for RTG's vcfeval; DEPRECATED!
☆21Apr 8, 2016Updated 9 years ago
Alternatives and similar repositories for rtgeval
Users that are interested in rtgeval are comparing it to the libraries listed below
Sorting:
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 2 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- Simulation of Epistasis Local adaptation, with Ancestry and Mate choice☆11Apr 22, 2023Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- Multi-sample somatic variant caller☆52Jan 27, 2022Updated 4 years ago
- SV detection from paired end reads mapping☆38Jul 19, 2010Updated 15 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 7 months ago
- ☆55Jun 24, 2020Updated 5 years ago
- ☆45Jul 7, 2016Updated 9 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- ☆18Jul 9, 2018Updated 7 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 8 years ago
- ☆15Mar 7, 2016Updated 9 years ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- Aligner for sequencing data☆21Apr 12, 2016Updated 9 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences☆23Feb 21, 2020Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 3 years ago