lh3 / rtgevalLinks
Wrapper for RTG's vcfeval; DEPRECATED!
☆21Updated 9 years ago
Alternatives and similar repositories for rtgeval
Users that are interested in rtgeval are comparing it to the libraries listed below
Sorting:
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- gvcf aggregation tool☆12Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 10 years ago
- ☆37Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- Population-wide Deletion Calling☆35Updated 4 months ago