Alternatives and similar repositories for LDhat_workflow

Users that are interested in LDhat_workflow are comparing it to the libraries listed below

• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated 7 months ago
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• Shuhua-Group / ArchaicSeeker2.0
  ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …
  ☆18Updated 4 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆44Updated 4 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated last year
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 2 months ago
• baozg / phased-assembly-check
  ☆32Updated 11 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆27Updated 3 months ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆12Updated last month
• hewm2008 / PopLDdecay
  PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
  ☆27Updated last year
• SAMtoBAM / PhasedDiploidGenomeAssemblyPipeline
  Using de-novo assembly and read-phasing to assemble reference-free diploid genomes
  ☆23Updated 3 months ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• sc-zhang / CATG
  CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…
  ☆17Updated 10 months ago
• cchauve / ANGeS
  Reconstruction of ancestral genome maps
  ☆16Updated 7 years ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• slimsuite / diploidocus
  Diploid genome assembly analysis tools
  ☆14Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆30Updated 3 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 6 months ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 4 years ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated 5 months ago
• jkimlab / DESCHRAMBLER
  ☆24Updated last month
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆34Updated 6 months ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 3 months ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆32Updated 4 years ago
• esolares / HapSolo
  Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding
  ☆20Updated 9 months ago