Population genetics analyses from NGS data
☆28Mar 8, 2021Updated 5 years ago
Alternatives and similar repositories for ngsPopGen
Users that are interested in ngsPopGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and data for "Evaluating statistics for the identification of introgressed loci" by Simon H. Martin, John W. Davey and Chris D. Jigg…☆11Jan 23, 2018Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Programs to analyse NGS data for population genetics purposes☆183Aug 27, 2024Updated 2 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆92Jun 14, 2021Updated 5 years ago
- Scripts for population genetics analysis☆21Nov 10, 2022Updated 3 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 7 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 5 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Oct 30, 2026Updated last week
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 8 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- ☆114Oct 14, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Jul 9, 2026Updated 3 months ago
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- Utilities for analyzing next generation sequencing data.☆16May 7, 2021Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 6 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- ☆19May 27, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Scripts to reproduce TrioBinning manuscript☆18Mar 31, 2020Updated 6 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated 2 years ago
- feature-based deep learning for the identification of selective sweeps☆60Mar 31, 2026Updated 7 months ago
- Haplotype based scans for selection☆151Jun 5, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆27Mar 8, 2026Updated 7 months ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Oct 23, 2026Updated 2 weeks ago
- ☆16Apr 9, 2021Updated 5 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 6 years ago