mfumagalli / ngsPopGenLinks
Population genetics analyses from NGS data
☆25Updated 4 years ago
Alternatives and similar repositories for ngsPopGen
Users that are interested in ngsPopGen are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆48Updated 3 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- ☆24Updated 8 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- ☆31Updated 2 years ago
- ☆52Updated 3 months ago
- ☆24Updated 2 years ago
- ☆43Updated 4 months ago
- ☆42Updated last year