Alternatives and similar repositories for Bherer_etal_SexualDimorphismRecombination

Users that are interested in Bherer_etal_SexualDimorphismRecombination are comparing it to the libraries listed below

• PhHermann / LDJump

  View on GitHub
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆44Nov 13, 2019Updated 6 years ago
• gymreklab / snpstr-imputation

  View on GitHub
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆14Jul 24, 2018Updated 7 years ago
• alanrogers / covld

  View on GitHub
  Estimate linkage disequilibrium between unphased loci
  ☆11Jun 9, 2015Updated 10 years ago
• auton1 / LDhot

  View on GitHub
  Detect recombination hotspots using population genetic data.
  ☆17Jun 10, 2020Updated 5 years ago
• lstevison / vcf-conversion-tools

  View on GitHub
  Tools to convert to and from vcf format
  ☆14Jun 21, 2017Updated 8 years ago
• Orion1618 / Odyssey

  View on GitHub
  Odyssey: A semi-automated pipeline for the prepping, cleaning, phasing, imputing, analyzing, and visualizing genomic data
  ☆19May 28, 2021Updated 4 years ago
• pierpal / ARGON

  View on GitHub
  Fast, whole-genome simulation of the discrete time Wright-Fisher process
  ☆15Apr 6, 2020Updated 5 years ago
• mcveanlab / TreeWAS

  View on GitHub
  ☆16Oct 16, 2017Updated 8 years ago
• freeseek / mocha

  View on GitHub
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆92Aug 22, 2025Updated 5 months ago
• pgxcentre / manhattan_generator

  View on GitHub
  Manhattan plot Generator
  ☆24Jun 1, 2020Updated 5 years ago
• ywchoi / phasing

  View on GitHub
  Evaluation of phasing performance
  ☆23Mar 6, 2018Updated 7 years ago
• biowdl / germline-DNA

  View on GitHub
  A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
  ☆26May 4, 2023Updated 2 years ago
• stephenslab / poisson.mash.alpha

  View on GitHub
  An R package for Poisson multivariate adaptive shrinkage.
  ☆11Apr 15, 2024Updated last year
• gbradburd / SpaceMix

  View on GitHub
  ☆30Oct 14, 2022Updated 3 years ago
• ZhiGroup / RaPID

  View on GitHub
  ☆32Dec 3, 2021Updated 4 years ago
• biosinodx / SCcaller

  View on GitHub
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Nov 27, 2024Updated last year
• DeveauP / QuantumClone

  View on GitHub
  Clonal reconstruction from HTS data
  ☆10Oct 27, 2021Updated 4 years ago
• biocore-ntnu / snpflip

  View on GitHub
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33May 15, 2019Updated 6 years ago
• macarthur-lab / tx_annotation

  View on GitHub
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34May 5, 2022Updated 3 years ago
• macarthur-lab / gene_lists

  View on GitHub
  List of gene lists for genomic analyses.
  ☆225Jun 24, 2022Updated 3 years ago
• bioinformatics-ptp / detectRUNS

  View on GitHub
  detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity
  ☆12May 25, 2023Updated 2 years ago
• AllenInstitute / scrattch.io

  View on GitHub
  Functions for handling RNA-seq files and formats as input and output for scrattch functions.
  ☆11Aug 20, 2025Updated 5 months ago
• zeahmed / DeepLearningWithMLdotNet

  View on GitHub
  ☆16Jul 5, 2019Updated 6 years ago
• precimed / simu

  View on GitHub
  Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies
  ☆12May 21, 2024Updated last year
• yoheirosen / sublinear-Li-Stephens

  View on GitHub
  Calculates the probability of a haplotype given a population reference panel
  ☆12Dec 9, 2024Updated last year
• MU-Data-Science / GAF

  View on GitHub
  Harnessing FABRIC for Scalable Human Genome Sequence Analysis
  ☆12Feb 7, 2026Updated last week
• cran / glinternet

  View on GitHub
   This is a read-only mirror of the CRAN R package repository. glinternet — Learning Interactions via Hierarchical Group-Lasso Regulariza…
  ☆13Sep 3, 2021Updated 4 years ago
• tidymodels / cloudstart

  View on GitHub
  RStudio Cloud ☁️ resources to accompany tidymodels.org
  ☆12Oct 28, 2021Updated 4 years ago
• waldronlab / curatedOvarianData

  View on GitHub
  The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer
  ☆11Oct 30, 2025Updated 3 months ago
• js2264 / HiCExperiment

  View on GitHub
  Importing and manipulating Hi-C data in R
  ☆11Jul 17, 2025Updated 6 months ago
• hwanglab / divine

  View on GitHub
  Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data
  ☆13Apr 18, 2019Updated 6 years ago
• andreyshabalin / ramwas

  View on GitHub
  RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
  ☆10Sep 22, 2021Updated 4 years ago
• huwenboshi / hess

  View on GitHub
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42May 2, 2018Updated 7 years ago
• popgenmethods / smcpp

  View on GitHub
  SMC++ infers population history from whole-genome sequence data.
  ☆172Jan 20, 2024Updated 2 years ago
• 23andMe / phasedibd

  View on GitHub
  Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
  ☆47Sep 21, 2023Updated 2 years ago
• popitsch / nanopanel2

  View on GitHub
  Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
  ☆11Sep 21, 2021Updated 4 years ago
• solemnwarning / kexec-loader

  View on GitHub
  ☆13Jan 10, 2026Updated last month
• naim-panjwani / LocusFocus

  View on GitHub
  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  ☆10Jan 26, 2026Updated 2 weeks ago
• smozaffari / CommitteeMeetingReports

  View on GitHub
  Committee Meeting Reports - LaTeX
  ☆10Jun 11, 2018Updated 7 years ago