bcgsc / abyssLinks
Assemble large genomes using short reads
☆322Updated 5 months ago
Alternatives and similar repositories for abyss
Users that are interested in abyss are comparing it to the libraries listed below
Sorting:
- An overview of all nanopack tools☆268Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 3 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆276Updated last month
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 2 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆257Updated last year
- Fast genome analysis from unassembled short reads☆297Updated last year
- Read trimming tool for Illumina NGS data.☆145Updated 10 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 2 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- TransDecoder source☆297Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated this week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Genome Assembly and Annotation Service code☆214Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆333Updated 3 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆276Updated 7 months ago
- A tool to circularize genome assemblies☆247Updated last year
- ☆290Updated 2 weeks ago
- Next generation sequencing reads de novo assembler.☆236Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- Toolset for SV simulation, comparison and filtering☆396Updated last year
- Classifier for metagenomic sequences☆266Updated 3 months ago
- Bayesian haplotype-based mutation calling☆318Updated last week
- GFF and GTF file manipulation and interconversion☆306Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆289Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆273Updated 4 months ago
- A genome browser designed for complex structural variants and long reads.☆287Updated 3 months ago
- Genome annotation with AUGUSTUS☆317Updated last month
- Count bases in BAM/CRAM files☆317Updated 3 years ago
- De-Novo Repeat Discovery Tool☆217Updated 2 months ago