Alternatives and similar repositories for abyss:

Users that are interested in abyss are comparing it to the libraries listed below

• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆347Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆236Updated 10 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆274Updated 4 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆233Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆285Updated 4 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆314Updated 8 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆538Updated 7 months ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆302Updated 6 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆242Updated 3 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆319Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆207Updated last year
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆371Updated last year
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆206Updated this week
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆279Updated 10 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆582Updated 6 months ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆296Updated 11 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆490Updated last year
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆276Updated 9 months ago
• lh3 / miniasm
  Ultrafast de novo assembly for long noisy reads (though having no consensus step)
  ☆314Updated last year
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆254Updated last month
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆200Updated last month
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆327Updated 3 weeks ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆198Updated 2 years ago
• arq5x / lumpy-sv
  lumpy: a general probabilistic framework for structural variant discovery
  ☆319Updated 2 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆333Updated last month
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆130Updated 9 years ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆312Updated 3 years ago
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆552Updated this week
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆392Updated last year
• pangenome / pggb
  the pangenome graph builder
  ☆414Updated last week