Alternatives and similar repositories for abyss

Users that are interested in abyss are comparing it to the libraries listed below

• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆281Updated 3 months ago
• lastz / lastz
  Program for aligning DNA sequences, a pairwise aligner.
  ☆232Updated 5 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆284Updated last year
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆267Updated 5 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆300Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆372Updated 3 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆249Updated last year
• isovic / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…
  ☆294Updated last year
• chanzuckerberg / shasta
  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
  ☆274Updated 3 years ago
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆306Updated last year
• broadinstitute / viral-ngs
  [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …
  ☆195Updated last year
• fbreitwieser / pavian
  🌈 Interactive analysis of metagenomics data
  ☆436Updated 2 months ago
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆403Updated 2 years ago
• lh3 / miniasm
  Ultrafast de novo assembly for long noisy reads (though having no consensus step)
  ☆345Updated 4 months ago
• arq5x / lumpy-sv
  lumpy: a general probabilistic framework for structural variant discovery
  ☆334Updated 3 years ago
• lh3 / wgsim
  Reads simulator
  ☆283Updated 4 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆283Updated last week
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆216Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆210Updated 2 years ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆284Updated 10 months ago
• MariaNattestad / Ribbon
  A genome browser designed for complex structural variants and long reads.
  ☆294Updated 6 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆148Updated 10 years ago
• fbreitwieser / krakenuniq
  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
  ☆241Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆243Updated 4 years ago
• refresh-bio / KMC
  Fast and frugal disk based k-mer counter
  ☆314Updated 2 weeks ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆260Updated last year
• alekseyzimin / masurca
  ☆270Updated 5 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆299Updated 2 months ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆543Updated last year