COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition and paired-end read LinkAge
☆17Mar 12, 2017Updated 9 years ago
Alternatives and similar repositories for COCACOLA
Users that are interested in COCACOLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 8 years ago
- ☆132Jul 9, 2023Updated 2 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆52Feb 8, 2022Updated 4 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- A genome binning method for contig binning, based on semi-supervised spectral clustering method.☆12Nov 21, 2020Updated 5 years ago
- An R package for estimating library complexity☆13Sep 4, 2022Updated 3 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Aug 31, 2016Updated 9 years ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated 2 weeks ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆93Nov 20, 2017Updated 8 years ago
- Estimate metagenomic coverage and sequence diversity☆62Dec 18, 2025Updated 6 months ago
- A tiny package manager for crucial unix and bioinformatics tools☆27Apr 30, 2015Updated 11 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Python-based client for downloading data made available through portals powered by the GDC-based portal system..☆22Jun 10, 2026Updated last week
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- c++ library for representing and interacting the gated cytometry data structure☆14Jan 29, 2025Updated last year
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 6 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 6 months ago
- ☆10Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆25Feb 2, 2021Updated 5 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 4 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 3 months ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Nov 3, 2020Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 5 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Apr 14, 2020Updated 6 years ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Ultra-fast and memory-efficient (meta-)genome assembler☆719Oct 28, 2025Updated 7 months ago
- Mapbox Studio style designed for outdoor adventures☆12Dec 2, 2016Updated 9 years ago
- Miscellaneous scripts☆24Sep 7, 2016Updated 9 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Peak-based selection of high quality cytometry data☆21Feb 23, 2026Updated 3 months ago