younglululu / COCACOLALinks
COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition and paired-end read LinkAge
☆17Updated 8 years ago
Alternatives and similar repositories for COCACOLA
Users that are interested in COCACOLA are comparing it to the libraries listed below
Sorting:
- Simulate metagenomic short reads from one or more populations.☆26Updated 4 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Estimate metagenomic coverage and sequence diversity☆53Updated 10 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- ☆52Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago