tseemann / VelvetOptimiser
Automatically optimise three of Velvet's assembly parameters.
☆47Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for VelvetOptimiser
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- Automatically exported from code.google.com/p/prottest3☆34Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆71Updated 5 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 5 months ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Edinburgh Genomics MinION training 2016☆34Updated 8 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- Tools and software library developed by the ONT Applications group☆61Updated 3 years ago
- An awk-like VCF parser☆54Updated 10 months ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- ☆35Updated last year
- Maximum likelihood demultiplexing☆46Updated last year
- PHAST☆68Updated last year
- ☆78Updated 10 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Genome Annotation Without Nightmares☆43Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 3 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆31Updated 11 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago