Automatically optimise three of Velvet's assembly parameters.
☆49Oct 24, 2022Updated 3 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below
Sorting:
- Latest MOCAT2 version☆18Mar 8, 2021Updated 4 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 9 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆295Oct 13, 2025Updated 4 months ago
- ☆131Jul 9, 2023Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆20Oct 12, 2025Updated 4 months ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆18Apr 20, 2025Updated 10 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Next generation sequencing reads de novo assembler.☆238Sep 20, 2025Updated 5 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletion…☆26Apr 25, 2018Updated 7 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- ☆271Jun 26, 2025Updated 8 months ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆47Feb 4, 2026Updated last month
- ☆38Apr 14, 2022Updated 3 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- BLAST-Like Alignment Tool☆22Jan 11, 2019Updated 7 years ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆21May 23, 2020Updated 5 years ago
- De novo transcriptome assembler for short reads☆64Mar 12, 2018Updated 7 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Oct 27, 2023Updated 2 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- ☆11Mar 4, 2025Updated last year
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 12 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- ☆10Sep 28, 2017Updated 8 years ago