tseemann / VelvetOptimiserLinks
Automatically optimise three of Velvet's assembly parameters.
☆47Updated 2 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below
Sorting:
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 3 years ago
- PHAST☆74Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- parallelized blat with multi-threads support☆53Updated 6 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆87Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- ☆49Updated 2 years ago
- ☆49Updated 9 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago