tseemann / VelvetOptimiserLinks
Automatically optimise three of Velvet's assembly parameters.
☆48Updated 3 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below
Sorting:
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- PHAST☆77Updated this week
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- ☆49Updated 2 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- ☆49Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 9 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- parallelized blat with multi-threads support☆53Updated 10 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year