tseemann / VelvetOptimiserLinks
Automatically optimise three of Velvet's assembly parameters.
☆49Updated 3 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below
Sorting:
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- ☆49Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 4 years ago
- ☆34Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 9 years ago
- UCSC Nanopore☆44Updated 6 years ago
- ONT assembly and Illumina polishing pipeline☆87Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Long Reads Annotation pipeline☆73Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago