Automatically optimise three of Velvet's assembly parameters.
☆49Oct 24, 2022Updated 3 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo sh…☆297Oct 13, 2025Updated 6 months ago
- ☆132Jul 9, 2023Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 6 months ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Next generation sequencing reads de novo assembler.☆240Sep 20, 2025Updated 7 months ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 8 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- ☆273Jun 26, 2025Updated 10 months ago
- De novo transcriptome assembler for short reads☆64Mar 12, 2018Updated 8 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Generate command line parser using getopt_long☆16Dec 11, 2024Updated last year
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- ☆19Apr 20, 2025Updated last year
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- ☆38Apr 14, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 3 months ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast implementation of the neighbour-joining phylogenetic inference method☆22May 23, 2020Updated 5 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- Collection of fragmentomic analysis scripts☆14Jul 3, 2024Updated last year
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Introduction to R workshop material, version 2☆13Mar 5, 2025Updated last year