tseemann / VelvetOptimiserLinks
Automatically optimise three of Velvet's assembly parameters.
☆48Updated 3 years ago
Alternatives and similar repositories for VelvetOptimiser
Users that are interested in VelvetOptimiser are comparing it to the libraries listed below
Sorting:
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated 2 years ago
- PHAST☆77Updated last week
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Assembly statistic visualisation☆92Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- ☆35Updated 2 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆87Updated last year
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- parallelized blat with multi-threads support☆53Updated 10 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆105Updated last week