Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
☆12Oct 1, 2024Updated last year
Alternatives and similar repositories for gssnng
Users that are interested in gssnng are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identify cell types and pathways affected by genetic risk loci.☆37Feb 29, 2024Updated 2 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 8 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 2 months ago
- An algorithm for classification from a graph-sparse support☆15Jan 30, 2019Updated 7 years ago
- CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential mar…☆18Jan 1, 2026Updated 8 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Representational similarity consistency across dataset and their driving factors.☆16Jun 20, 2025Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Aug 11, 2026Updated last month
- ☆12Sep 20, 2019Updated 7 years ago
- ☆13Sep 30, 2024Updated last year
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 10 months ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- ☆17Sep 13, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆86Jul 25, 2025Updated last year
- ☆11Jan 7, 2020Updated 6 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- Docker container for Illumina bcl2fastq☆13Aug 7, 2024Updated 2 years ago
- Diffusion maps for python☆12Apr 19, 2020Updated 6 years ago
- ☆46Nov 26, 2025Updated 9 months ago
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code repository for TCAT analyses☆16Sep 26, 2025Updated 11 months ago
- Processing workflow for COVID-19 single cell data☆17Dec 23, 2021Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- R package☆22Dec 16, 2023Updated 2 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆17Mar 4, 2017Updated 9 years ago