IlyaLab / gssnngLinks
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
☆12Updated 8 months ago
Alternatives and similar repositories for gssnng
Users that are interested in gssnng are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 3 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- ☆14Updated 3 months ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 9 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 10 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 7 months ago
- The million-scale method for single-cell analysis☆10Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- ☆13Updated 7 months ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆12Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆12Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated last week
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 5 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆18Updated 8 months ago
- Code, data and analysis for moslin.☆12Updated 7 months ago