RGLab / covid19_sc
Processing workflow for COVID-19 single cell data
☆17Updated 3 years ago
Alternatives and similar repositories for covid19_sc
Users that are interested in covid19_sc are comparing it to the libraries listed below
Sorting:
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Explore the cancer relevance of your gene list☆51Updated 2 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆34Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆35Updated 2 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆35Updated last month
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- benchmark for single-cell RNA-seq imputation methods☆25Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- ☆12Updated 4 years ago
- ☆12Updated last year
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆26Updated 4 years ago
- ☆49Updated 9 months ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 8 months ago
- ☆29Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Using BCR and expression for sequence embedding☆21Updated last month
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year