Processing workflow for COVID-19 single cell data
☆17Dec 23, 2021Updated 4 years ago
Alternatives and similar repositories for covid19_sc
Users that are interested in covid19_sc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Age-dependent topic modelling☆12Mar 27, 2026Updated 7 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 6 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 8 years ago
- Full annotation using shape-constrained trees☆31Sep 15, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 5 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 7 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Evaluating spatially variable gene detection methods for spatial transcriptomics data☆11Jun 8, 2026Updated 4 months ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆19Aug 28, 2020Updated 6 years ago
- ☆10Dec 11, 2024Updated last year
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A binary tree algorithm for automatic gating in cytometry analysis☆11Jul 26, 2025Updated last year
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 6 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 9 years ago
- Code repository for TCAT analyses☆17Sep 26, 2025Updated last year
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆17Mar 4, 2017Updated 9 years ago
- Scripts to reproduce TrioBinning manuscript☆18Mar 31, 2020Updated 6 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.☆10Jan 21, 2020Updated 6 years ago
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Single cell interactive plotting tools☆25Jun 12, 2020Updated 6 years ago
- Classify DNA sequence into Binary class using different Classification algorithms.☆12Feb 24, 2024Updated 2 years ago
- ☆10Jun 18, 2020Updated 6 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆20Jun 13, 2024Updated 2 years ago
- TSCAN: Tools for Single-Cell ANalysis☆43Sep 8, 2022Updated 4 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 10 months ago
- 🦠 List of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencin…☆46May 21, 2020Updated 6 years ago
- ☆11May 27, 2024Updated 2 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆40Mar 2, 2025Updated last year
- ☆11May 28, 2018Updated 8 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago