Processing workflow for COVID-19 single cell data
☆17Dec 23, 2021Updated 4 years ago
Alternatives and similar repositories for covid19_sc
Users that are interested in covid19_sc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Dec 21, 2021Updated 4 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- Full annotation using shape-constrained trees☆29Sep 15, 2023Updated 2 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Code repository for TCAT analyses☆13Sep 26, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 7 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 8 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Classify DNA sequence into Binary class using different Classification algorithms.☆11Feb 24, 2024Updated 2 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Mar 4, 2017Updated 9 years ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- pliman R package☆18Feb 16, 2026Updated last month
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- Scripts to reproduce TrioBinning manuscript☆17Mar 31, 2020Updated 5 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- TSCAN: Tools for Single-Cell ANalysis☆42Sep 8, 2022Updated 3 years ago
- Code and example of the D-SPIN framework☆24Mar 12, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆25Dec 11, 2023Updated 2 years ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆39Mar 2, 2025Updated last year
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- ☆41Updated this week
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Jan 17, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- ☆22Jan 6, 2026Updated 2 months ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- 🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq…☆46May 21, 2020Updated 5 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Aug 5, 2022Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago