ma-compbio / GAGE-seq
Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
☆11Updated 11 months ago
Alternatives and similar repositories for GAGE-seq:
Users that are interested in GAGE-seq are comparing it to the libraries listed below
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆31Updated last month
- ☆45Updated 4 months ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Updated last year
- ☆50Updated 6 months ago
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆56Updated 10 months ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆14Updated 6 months ago
- ☆27Updated 2 weeks ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆17Updated last year
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- CAST package☆31Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆51Updated 5 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 4 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated 2 weeks ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated 3 weeks ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 4 months ago
- Construct Tumor Transition Zone Microenvironment☆41Updated 3 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated 3 weeks ago
- ☆44Updated 10 months ago
- ☆24Updated 9 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆48Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆27Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Spatial Cellular Estimator for Tumors☆49Updated last week
- R implementation of GeneTrajectory☆53Updated 11 months ago
- inferring regulatory cellular dynamics☆35Updated last month
- ☆16Updated this week