ma-compbio / GAGE-seqLinks
Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
☆15Updated 4 months ago
Alternatives and similar repositories for GAGE-seq
Users that are interested in GAGE-seq are comparing it to the libraries listed below
Sorting:
- ☆62Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆35Updated last year
- ☆129Updated 3 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 5 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆20Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆76Updated 6 months ago
- Detect hierarchical structures in cell-cell communications☆16Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆72Updated 7 months ago
- R implementation of GeneTrajectory☆68Updated last year
- Construct Tumor Transition Zone Microenvironment☆53Updated 7 months ago
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Updated last year
- Predict RNA velocity through deep learning☆72Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 6 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- ☆52Updated 4 months ago
- ☆47Updated last year
- ☆32Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 6 months ago
- Code used to benchmark Xenium☆73Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆34Updated 3 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16Updated 8 months ago