Alternatives and similar repositories for ChromBERT

Users that are interested in ChromBERT are comparing it to the libraries listed below

• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆20Updated 4 months ago
• MonashBioinformaticsPlatform / polyApipe
  polyApipe
  ☆19Updated 10 months ago
• JiaqiLiZju / Nvwa
  ☆36Updated 3 years ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆85Updated last year
• mdozmorov / scHiC_notes
  Notes on single-cell Hi-C technologies, tools, and data
  ☆86Updated last year
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆18Updated 4 months ago
• buenrostrolab / scPrinter
  ☆56Updated 2 months ago
• XiDsLab / scFusion
  ☆22Updated 3 years ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆92Updated last month
• SUwonglab / PECA
  PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data
  ☆45Updated 2 months ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆23Updated last year
• yxwucq / scExtract
  Automatic annotation of single-cell RNA-seq data from the literature
  ☆38Updated 4 months ago
• sajuukLyu / Protocols-4pub
  Multi-omics analysis protocols by Lyu.
  ☆52Updated 2 years ago
• bvaldebenitom / SoloTE
  ☆32Updated last year
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆38Updated last year
• GuanLab / Anchor
  This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
  ☆20Updated 5 years ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆14Updated 7 months ago
• wenweixiong / MARVEL
  ☆52Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆58Updated last month
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆17Updated 5 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• mdozmorov / ChIP-seq_notes
  Notes on ChIP-seq and other-seq-related tools
  ☆26Updated 4 months ago
• quadbio / RNAseq_tutorial
  ☆34Updated last year
• JinLabBioinfo / DeepLoop
  DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data
  ☆34Updated 8 months ago
• HYsxe / PRINT
  ☆37Updated last year
• yal054 / epiformer
  ☆26Updated 7 months ago
• zhoujt1994 / scHiCluster
  ☆69Updated 3 weeks ago
• YeoLab / eCLIP
  ☆38Updated 3 years ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆72Updated last year