zhaoweiyu-github / ChromBERTLinks
ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network
☆16Updated 2 months ago
Alternatives and similar repositories for ChromBERT
Users that are interested in ChromBERT are comparing it to the libraries listed below
Sorting:
- polyApipe☆18Updated 5 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 2 weeks ago
- Notes on single-cell Hi-C technologies, tools, and data☆80Updated 9 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆17Updated 2 weeks ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆28Updated 7 months ago
- ☆35Updated 2 years ago
- Detection and couting alternative TSS in single cells☆15Updated last year
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- ☆32Updated last year
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated 3 months ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 8 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆77Updated last year
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated last month
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 10 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆12Updated 2 years ago
- ☆21Updated 3 years ago
- ☆37Updated 2 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆53Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated last year