cfe-lab / MiCallLinks
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
☆18Updated this week
Alternatives and similar repositories for MiCall
Users that are interested in MiCall are comparing it to the libraries listed below
Sorting:
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Bioinformatics Open Source Sequence machine☆33Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- ☆23Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago
- An RNA virus strain-level identification tool for short reads.☆21Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- ☆17Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆12Updated 2 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 3 weeks ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated last month
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago
- ☆10Updated 13 years ago
- reference free variant assembly☆34Updated 2 years ago
- ☆12Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Reference genome quality scores☆21Updated 4 years ago
- ☆19Updated 8 years ago
- Influenza genome analysis Nextflow workflow☆28Updated last month
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last month
- simple and not slow ORF caller☆21Updated 7 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆34Updated last year
- Repo for PrimerSchemes☆12Updated last month