cfe-lab / MiCall
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C
☆14Updated this week
Related projects ⓘ
Alternatives and complementary repositories for MiCall
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- ☆15Updated 4 months ago
- ☆27Updated last year
- ☆19Updated 7 years ago
- ☆23Updated 5 years ago
- ☆10Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 3 weeks ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- PanGenomePipeline☆15Updated 7 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Inference of putative transmission phylogenetic clusters☆11Updated 4 years ago
- ☆10Updated 12 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- ☆29Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 4 months ago
- Intra-species bacterial contamination detection☆22Updated this week
- Methods to determine sequence element (unitig) presence/absence☆18Updated 10 months ago
- Prokaryotic Pangenome Analysis☆24Updated 2 years ago
- GC Skew Test for Bacterial Genomes☆27Updated 2 years ago
- map Illumina metagenomes to genomes!☆37Updated this week
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 5 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆17Updated 3 weeks ago
- ☆11Updated 2 years ago
- Implementation of Krona to QIIME2☆15Updated 8 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year