ashleymaeconard / TIMEOR
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
☆16Updated 3 years ago
Alternatives and similar repositories for TIMEOR:
Users that are interested in TIMEOR are comparing it to the libraries listed below
- ☆23Updated 3 years ago
- ☆15Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- iread☆24Updated 3 years ago
- simplified cellranger for long-read data☆18Updated 5 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆21Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆21Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- a set of NGS pipelines☆24Updated last week
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- interactive plots for differential expression analysis☆31Updated this week
- ☆15Updated 7 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆21Updated 8 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆18Updated 5 years ago