ashleymaeconard / TIMEOR
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
☆16Updated 3 years ago
Alternatives and similar repositories for TIMEOR:
Users that are interested in TIMEOR are comparing it to the libraries listed below
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆23Updated 3 years ago
- ☆21Updated 10 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- iread☆24Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆17Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Long read to rMATS☆31Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆15Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- interactive plots for differential expression analysis☆32Updated last week
- ☆28Updated 3 months ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- ☆10Updated 5 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago