ashleymaeconard / TIMEORLinks
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
☆17Updated 3 years ago
Alternatives and similar repositories for TIMEOR
Users that are interested in TIMEOR are comparing it to the libraries listed below
Sorting:
- ☆16Updated 8 years ago
- ☆23Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- An R interface to the MEME Suite☆52Updated 3 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 4 months ago
- ☆20Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Define regions in the genome☆32Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆32Updated 9 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- ☆15Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year