ashleymaeconard / TIMEORLinks
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
☆17Updated 3 years ago
Alternatives and similar repositories for TIMEOR
Users that are interested in TIMEOR are comparing it to the libraries listed below
Sorting:
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Time-Course Multi-Omics data integration☆25Updated last year
- ☆23Updated 4 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 6 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆20Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Long read to rMATS☆32Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- documentation for trackViewer☆29Updated 6 years ago
- a set of NGS pipelines☆24Updated 3 weeks ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- simplified cellranger for long-read data☆19Updated last month
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 4 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- ☆32Updated 9 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆35Updated 3 years ago