TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
☆17Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for TIMEOR
Users that are interested in TIMEOR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Federating genomes with love (and synteny derived from functional annotations)☆45Mar 20, 2026Updated 3 weeks ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆23Jul 11, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data☆21May 2, 2022Updated 3 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Scripts and files for the annual Short Read Analysis Workshop☆12Apr 2, 2026Updated last week
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 6 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated last month
- All data and notebook for my 2020 scRNA-seq analysis workshop☆18Jul 27, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22May 24, 2016Updated 9 years ago
- 📊 Unipept visualisations, packaged for easy reusability☆20Feb 25, 2026Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated 3 weeks ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- ☆23Mar 6, 2025Updated last year
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R interface to the JBrowse 2 Linear Genome View.☆39Mar 12, 2024Updated 2 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Updated this week
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated last month
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 6 months ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆36May 2, 2021Updated 4 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Mar 5, 2026Updated last month
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆29Jun 23, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis☆40May 17, 2021Updated 4 years ago
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 5 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- rMSI processing methods using C++☆11Dec 3, 2021Updated 4 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆27Sep 30, 2025Updated 6 months ago
- Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.☆41Feb 24, 2026Updated last month