orangeSi / GSSplaygroundLinks
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…
☆33Updated 5 years ago
Alternatives and similar repositories for GSSplayground
Users that are interested in GSSplayground are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Structural variant caller☆55Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- ☆29Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- TD2☆29Updated 3 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ☆32Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year