l-modolo / TEtoolsLinks
TE tools for TE RNASeq and smallRNASeq analysis with galaxy
☆12Updated 4 years ago
Alternatives and similar repositories for TEtools
Users that are interested in TEtools are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- ☆78Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆79Updated last year
- ☆84Updated 11 months ago
- Application of pan-genome for population☆116Updated 3 months ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated last week
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ☆45Updated 9 years ago
- parallelized blat with multi-threads support☆55Updated last year
- Scripting analyses of genomes in Ensembl Plants☆42Updated last month
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆34Updated last year
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- PHAST☆80Updated last week
- De novo annotation of young retrotransposons☆47Updated 3 years ago
- ☆22Updated 4 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Variant annotation and merging pipeline☆42Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Neural network classification of TE☆97Updated 4 months ago