TE tools for TE RNASeq and smallRNASeq analysis with galaxy
☆12Apr 2, 2021Updated 5 years ago
Alternatives and similar repositories for TEtools
Users that are interested in TEtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- NeSSie library and tool for the analysis of elements of sequence symmetry in nucleic-acids☆13Jun 26, 2018Updated 8 years ago
- ☆10Jul 1, 2020Updated 6 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 7 years ago
- Edit scripts programatically☆13Jul 21, 2023Updated 3 years ago
- ☆11Mar 19, 2026Updated 7 months ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 8 months ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆95Jan 26, 2023Updated 3 years ago
- Software package for estimating fine-scale recombination rate.☆19Jun 8, 2021Updated 5 years ago
- ☆11Jan 29, 2020Updated 6 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Transposable Elements MOvement detection using LOng reads☆25Oct 21, 2026Updated last week
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago
- Suite for phased clusters discovery, comparison, annotation and to identify miRNA triggers - uses MapReduce model [In review]☆10Oct 9, 2021Updated 5 years ago
- Scripts and datasets for the analysis on convergent genome evolution of animal terrestrialisation☆16Sep 27, 2025Updated last year
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Models for COVID data from Johns Hopkins CSSE, the COVID 19 tracking project, and other data sources☆12Jan 14, 2021Updated 5 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆13Jun 22, 2023Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code for our paper "Genetic architecture and lifetime dynamics of inbreeding depression in a wild mammal."☆14Sep 24, 2024Updated 2 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆29Oct 1, 2020Updated 6 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 8 years ago
- ☆28Feb 19, 2025Updated last year
- An example of how to organize files for a research project to increase reproducibility☆12Nov 2, 2018Updated 8 years ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆21Oct 7, 2017Updated 9 years ago
- ☆11Feb 12, 2022Updated 4 years ago
- Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016☆17Sep 28, 2021Updated 5 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a BLAST+ wrapper for Node.js☆12Jun 20, 2018Updated 8 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 9 years ago
- Cookiecutter for snakemake slurm profile☆17Jul 22, 2023Updated 3 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Powering docs.labdao.xyz. All LabDAO project documentation is deployed via this repository.☆13Apr 26, 2023Updated 3 years ago
- PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)☆21Nov 10, 2024Updated last year
- Quantification of transposable element expression using RNA-seq☆98Feb 8, 2024Updated 2 years ago