PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)
☆21Nov 10, 2024Updated last year
Alternatives and similar repositories for PiRATE
Users that are interested in PiRATE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Jan 29, 2020Updated 6 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆25Oct 21, 2026Updated last week
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆38Apr 17, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆28Dec 7, 2022Updated 3 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆53Sep 24, 2026Updated last month
- Analysis of transposable elements☆14Aug 19, 2026Updated 2 months ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated 2 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Mar 3, 2023Updated 3 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Annotation helper tool for the manual curation of transposable element consensus sequences☆57Oct 13, 2026Updated 2 weeks ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆29Oct 1, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆227Updated this week
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Sep 5, 2019Updated 7 years ago
- Convert GFF file to GenBank file format while extracting the sequences between the annotated regions☆15Sep 6, 2023Updated 3 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Annotation Pipeline for NLR genes☆17Dec 6, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago
- ☆11Mar 19, 2026Updated 7 months ago
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆14Mar 5, 2021Updated 5 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- ☆15Jul 21, 2022Updated 4 years ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- A genome assembly finishing tool☆11Dec 1, 2021Updated 4 years ago
- ☆40Jun 19, 2023Updated 3 years ago