JBerthelier / PiRATELinks
PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)
☆18Updated 9 months ago
Alternatives and similar repositories for PiRATE
Users that are interested in PiRATE are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Synteny Imager☆63Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆44Updated 8 years ago
- ☆50Updated 2 months ago
- A pipeline that accepts a VCF file to run through Admixture☆62Updated 7 months ago
- k-mer learning materials☆73Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆32Updated 4 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 7 months ago
- ☆26Updated 5 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated 2 weeks ago
- Transcripts annotation and GO enrichment Fisher tests☆26Updated 2 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- A program to call variants from genome alignment☆81Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆56Updated this week
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Portable solution to generate genome alignment chains using lastz☆57Updated 2 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 6 years ago