andrewgull / MGERTLinks
Mobile Genetic Elements Retrieving Tool
☆16Updated 5 months ago
Alternatives and similar repositories for MGERT
Users that are interested in MGERT are comparing it to the libraries listed below
Sorting:
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆32Updated this week
- Sorts amplicons from Nanopore sequencing data based on similarity☆39Updated 3 weeks ago
- Lightweight bioinformatics pipeline for microbial genome recovery☆17Updated last week
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 11 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆33Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- Reorients assembled microbial sequences☆128Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆81Updated last year
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆41Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Synteny Imager☆64Updated 3 months ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated 2 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- SeqSero2☆38Updated 3 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 6 months ago
- Calculate confidence scores from Kraken2 output☆23Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆31Updated 6 months ago
- ☆37Updated 3 years ago
- IS mapping software☆56Updated 3 years ago