andrewgull / MGERTLinks
Mobile Genetic Elements Retrieving Tool
☆15Updated 3 months ago
Alternatives and similar repositories for MGERT
Users that are interested in MGERT are comparing it to the libraries listed below
Sorting:
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆29Updated this week
- Lightweight bioinformatics pipeline for microbial genome recovery☆13Updated last month
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆76Updated 10 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆38Updated 2 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆46Updated 2 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆67Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆49Updated 9 months ago
- A MinION-based pipeline for tracking species biodiversity☆13Updated last year
- ☆78Updated last month
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.☆40Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- Synteny Imager☆64Updated last month
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆32Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Reorients assembled microbial sequences☆125Updated last week
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆42Updated 4 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 3 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 7 months ago
- ☆22Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated 2 years ago
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆27Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Interactive quality assessment of genome assemblies☆107Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago