Mobile Genetic Elements Retrieving Tool
☆16Feb 11, 2026Updated 8 months ago
Alternatives and similar repositories for MGERT
Users that are interested in MGERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jul 1, 2020Updated 6 years ago
- skandiver is a program for identifying mobile genetic elements (prophages, plasmids, transposases, etc.) from assembled whole genome sequ…☆16Nov 20, 2025Updated 11 months ago
- ☆28Feb 19, 2025Updated last year
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated last week
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Snakemake Tutorial for NGSSchool.☆10Aug 31, 2020Updated 6 years ago
- NeSSie library and tool for the analysis of elements of sequence symmetry in nucleic-acids☆13Jun 26, 2018Updated 8 years ago
- Catalogue of Life toolkit for Python☆11Aug 4, 2020Updated 6 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 3 years ago
- ☆14Jan 8, 2020Updated 6 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 3 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆131Oct 30, 2023Updated 3 years ago
- Software package for estimating fine-scale recombination rate.☆19Jun 8, 2021Updated 5 years ago
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Updated this week
- Distribution of TEs and their relationship to genes in host genome☆25Jun 20, 2023Updated 3 years ago
- A genome alignment and visualization system☆36Nov 15, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Transposable Elements MOvement detection using LOng reads☆25Oct 21, 2026Updated last week
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- ☆15Nov 28, 2022Updated 3 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Inference of homologous recombination in bacteria using whole genome sequences☆10Sep 26, 2025Updated last year
- ☆26Apr 20, 2023Updated 3 years ago
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆70May 26, 2026Updated 5 months ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Various scripts for various purposes☆10Mar 4, 2025Updated last year