Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
☆29Sep 5, 2019Updated 6 years ago
Alternatives and similar repositories for TEanalysis
Users that are interested in TEanalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆87May 25, 2021Updated 5 years ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- ☆15Nov 25, 2019Updated 6 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆12Mar 19, 2026Updated 4 months ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated last year
- ☆11Jul 4, 2022Updated 4 years ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 3 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆94Jan 26, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆27Jun 8, 2022Updated 4 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆20Jul 13, 2020Updated 6 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆23Apr 24, 2017Updated 9 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- circos pipeline☆20May 8, 2021Updated 5 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 4 months ago
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆37Updated this week
- ☆19Nov 9, 2020Updated 5 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆220Updated this week
- ☆13Nov 15, 2017Updated 8 years ago
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆29Jan 27, 2022Updated 4 years ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆26Dec 5, 2024Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37May 18, 2022Updated 4 years ago
- ☆12Feb 16, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 6 months ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- ☆22Jan 13, 2026Updated 6 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 3, 2026Updated 2 weeks ago
- Galaxy Docker Image for the HiCExplorer☆11Mar 3, 2019Updated 7 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 10 months ago