OpenGene / dedupLinks
Deduplication for cfDNA sequencing data
☆11Updated 8 years ago
Alternatives and similar repositories for dedup
Users that are interested in dedup are comparing it to the libraries listed below
Sorting:
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Updated 5 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- fastx-utils using klib☆20Updated 5 years ago
- ☆46Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆26Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Updated 8 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 5 months ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆17Updated 2 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14Updated 6 months ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Updated 6 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Updated 6 years ago