Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/
☆21Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for FastSK
Users that are interested in FastSK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package that includes a variety of string kernel methods.☆17Jan 7, 2020Updated 6 years ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆10Apr 8, 2025Updated last year
- K-mer Counting for Biological Sequence Analysis☆28Jan 23, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Feb 2, 2021Updated 5 years ago
- Docker image for the DeepBind method.☆16Nov 7, 2015Updated 10 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Review Paper: Deep Learning for Genomics: A Concise Overview☆13Mar 13, 2018Updated 8 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information☆27May 4, 2022Updated 3 years ago
- Conservation analysis of homologous proteins with Python☆13Jul 11, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 weeks ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- ☆34Oct 27, 2021Updated 4 years ago
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 3 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 5 months ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- Multifractal analysis in Matlab and Python☆10Mar 25, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Monitorización de alumnos en la plataforma Moodle☆13Sep 17, 2025Updated 6 months ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Machine Learning with the Minimum Nescience Principle.☆11Sep 2, 2025Updated 7 months ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- Analyse enhancer strength based on MPRA experiments.☆12Nov 12, 2020Updated 5 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 7 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave☆13Jul 15, 2019Updated 6 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Regression Modeling Strategies Bayesian☆17Apr 27, 2025Updated 11 months ago
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 7 years ago
- Material related to "Unmixing oscillatory brain activity by EEG source localization and empirical mode decomposition". Implementation of …☆15Jan 25, 2019Updated 7 years ago
- Stray has been renamed fido, development continues at jsilve24/fido☆23Jan 26, 2022Updated 4 years ago