Alternatives and similar repositories for FastSK:

Users that are interested in FastSK are comparing it to the libraries listed below

• rmenegaux / fastDNA
  ☆24Updated 3 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆44Updated 5 months ago
• QData / GaKCo-SVM
  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
  ☆14Updated 5 years ago
• wangshenguiuc / set2gaussian
  code repo for Set2Gaussian
  ☆15Updated 4 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 5 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆37Updated last year
• regev-lab / interpretable-splicing-model
  Interpretable splicing model
  ☆20Updated last year
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 4 months ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 9 months ago
• hendrixlab / mRNN
  mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.
  ☆19Updated 6 years ago
• kundajelab / DART-Eval
  ☆25Updated last month
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• svalkiers / clusTCR
  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…
  ☆50Updated 9 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆64Updated 2 years ago
• biothings / mygene.py
  mygene is an easy-to-use Python wrapper to access MyGene.Info services.
  ☆86Updated 2 weeks ago
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆70Updated 3 weeks ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆30Updated 5 months ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆44Updated last year
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆31Updated 4 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆16Updated 6 months ago
• etirouthier / keras_dna
  ☆23Updated 3 years ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆33Updated 5 months ago
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated 4 months ago
• smaslova / AI-TAC
  ☆26Updated last year
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago