Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/
☆21Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for FastSK
Users that are interested in FastSK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package that includes a variety of string kernel methods.☆17Jan 7, 2020Updated 6 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Aug 28, 2019Updated 6 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year
- K-mer Counting for Biological Sequence Analysis☆29Jan 23, 2026Updated 6 months ago
- ☆10Apr 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Feb 2, 2021Updated 5 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information☆27May 4, 2022Updated 4 years ago
- Convenient Interface to Inverse Ising (ConIII)☆22Jun 3, 2026Updated 2 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 4 months ago
- ☆34Oct 27, 2021Updated 4 years ago
- Monitorización de alumnos en la plataforma Moodle☆13Sep 17, 2025Updated 10 months ago
- Python routines for generating simple models of DNA☆13Oct 19, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accompanying scripts and material to conduct a temporal EFA on ERP data as explained in Scharf, Widmann, Bonmassar & Wetzel (2021). Pleas…☆10Aug 5, 2022Updated 4 years ago
- Fast Inference of Networks from Directed Regulations☆23Dec 7, 2023Updated 2 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Oct 23, 2024Updated last year
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- Repo for R2D3 section at the javascript for shiny users workshop at RStudio::Conf 2020☆15Jan 28, 2020Updated 6 years ago
- Multifractal analysis in Matlab and Python☆11Mar 25, 2020Updated 6 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Analyse enhancer strength based on MPRA experiments.☆13Nov 12, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- Recursive Neural Networks implemented with Tensorflow☆13Nov 5, 2019Updated 6 years ago
- ☆16Jun 29, 2026Updated last month
- modules for Nepali language processing☆13Dec 31, 2017Updated 8 years ago
- Various automated MATLAB pipelines for preprocessing EEG☆13Feb 25, 2020Updated 6 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- Recreation of the DNA Sequence Classification Paper☆12Oct 27, 2016Updated 9 years ago
- aCcelerated Alignment-FrEe sequence analysis☆12May 8, 2018Updated 8 years ago
- General pipeline used for analyzing EEG data where Raw EEG data gets transformed into ERPS and Stats are done in R (Mixed effects models)☆14Mar 8, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NOCAD - Network based Observability and Controlability Analysis of Dynamical Systems toolbox for MATLAB and Octave☆13Jul 15, 2019Updated 7 years ago
- Confidence In Network Meta-Analysis☆15Jun 24, 2021Updated 5 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- ☆18Oct 22, 2024Updated last year
- ☆11Feb 8, 2023Updated 3 years ago
- Regression Modeling Strategies Bayesian☆18Jun 18, 2026Updated last month
- A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks☆15Sep 22, 2018Updated 7 years ago