QData / FastSK
Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/
☆21Updated 2 years ago
Alternatives and similar repositories for FastSK:
Users that are interested in FastSK are comparing it to the libraries listed below
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Updated 3 years ago
- ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting☆14Updated 5 years ago
- Jax code for functional genomics ML☆12Updated last month
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 9 months ago
- ☆9Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- Sequence data label generation and ingestion into deep learning models☆12Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆52Updated 4 years ago
- code repo for Set2Gaussian☆15Updated 4 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆72Updated last week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆35Updated 5 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- Diverse Genomic Embedding Benchmark☆44Updated 3 weeks ago
- A python package that includes a variety of string kernel methods.☆17Updated 5 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated last year
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 8 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Archetypal Analysis network (AAnet)☆32Updated 2 months ago
- ☆23Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated 10 months ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- ☆16Updated last year
- Interpretable splicing model☆20Updated last year
- ☆24Updated 3 years ago