shawnzhangyx / cvdc_scriptsLinks
scripts for analyzing the CVDC data.
☆20Updated 6 years ago
Alternatives and similar repositories for cvdc_scripts
Users that are interested in cvdc_scripts are comparing it to the libraries listed below
Sorting:
- ☆12Updated 6 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated last month
- ☆25Updated 4 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆17Updated 7 months ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆52Updated 7 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 9 months ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- 4C-seq processing pipeline☆26Updated 10 months ago
- Package for analysis and characterization of differential TADs☆26Updated 3 years ago
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Tutorial Website☆63Updated 5 years ago
- an efficient Hi-C data processing pipeline☆17Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12Updated 2 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Updated 6 months ago
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆75Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- ☆37Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year