Alternatives and similar repositories for maw

Users that are interested in maw are comparing it to the libraries listed below

• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• mklarqvist / tachyon
  High-level API for storing and querying sequence variant data
  ☆20Updated 6 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 8 years ago
• lh3 / lh3-snippets
  ☆13Updated 6 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 6 years ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆53Updated last year
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆15Updated 4 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• langmead-lab / vargas
  ☆24Updated 5 months ago
• dpastling / plethora
  Copy number estimation of highly duplicated sequences
  ☆10Updated 8 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 5 years ago
• DCGenomics / DangerTrack
  ☆13Updated 8 years ago
• Kingsford-Group / variantstore
  VariantStore: A Large-Scale Genomic Variant Search Index
  ☆39Updated 4 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 6 months ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• BenLangmead / bowtie-scaling
  Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"
  ☆11Updated 7 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 8 years ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆32Updated 2 years ago
• ekg / wflign
  the we-flyin WFA-guided ultralong tiling sequence aligner
  ☆10Updated 4 years ago
• lh3 / sdg
  EXPERIMENTAL implementation of side graph
  ☆10Updated 10 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 7 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated 2 years ago