kundajelab / seqdataloader
Sequence data label generation and ingestion into deep learning models
☆12Updated 3 years ago
Alternatives and similar repositories for seqdataloader
Users that are interested in seqdataloader are comparing it to the libraries listed below
Sorting:
- Empirical Bayes methods for single cell data☆15Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆23Updated 2 years ago
- Fit generalized linear models in python.☆27Updated 2 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆20Updated 2 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Tools for munging genomic data☆21Updated 5 years ago
- Genetics training camp☆21Updated 4 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- GECO (Gene Expression Clustering Optimization; theGECOapp.com) is a minimalistic GUI app that utilizes non-linear reduction techniques to…☆9Updated last year
- ☆12Updated last year
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- DEPRECATED: Store and query public TCGA data☆11Updated 8 years ago
- A library to simulate single-cell data☆2Updated 2 years ago
- Align sequences and then parse features.☆18Updated last month
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- ☆11Updated 7 years ago
- Literature mining for T cell relations☆23Updated 2 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆39Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- ☆21Updated 8 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- ☆20Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago