kundajelab / seqdataloaderLinks
Sequence data label generation and ingestion into deep learning models
☆12Updated 3 years ago
Alternatives and similar repositories for seqdataloader
Users that are interested in seqdataloader are comparing it to the libraries listed below
Sorting:
- ☆21Updated 8 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on…☆29Updated 7 years ago
- ☆23Updated 3 years ago
- Empirical Bayes methods for single cell data☆16Updated 4 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆10Updated 8 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Updated 6 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆66Updated last year
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Deep learning-based prediction of regulatory genome sequences☆12Updated 5 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆14Updated 6 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Find bimodal, unimodal, and multimodal features in your data☆27Updated 6 years ago
- ☆12Updated last year
- Main codes for AD epigenetics paper by Nativio et al.☆11Updated 5 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Updated 3 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 8 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- ☆13Updated 6 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks☆86Updated 5 years ago