epierson9 / ZIMMLinks
Zero-inflated mixture model for single-cell data.
☆14Updated 9 years ago
Alternatives and similar repositories for ZIMM
Users that are interested in ZIMM are comparing it to the libraries listed below
Sorting:
- This repository is retired software☆13Updated 10 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Updated 8 years ago
- We have moved to https://github.com/limix/limix.☆23Updated 8 years ago
- Shape analysis of high-throughput data☆19Updated 9 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- ☆12Updated 6 years ago
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- Code for performing PCA followed by CCA☆18Updated 6 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 3 weeks ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 2 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- ☆21Updated 8 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated last week
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- K-means clustering for large single-cell datasets☆11Updated 3 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆23Updated last year
- Probabilistic pseudotime for single-cell RNA-seq data☆10Updated 8 years ago
- Citrus Development Code☆31Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- Volume-regularized NMF☆17Updated 3 years ago
- ☆20Updated 4 years ago
- ☆12Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago