yifeng-li / DECRESLinks
Deep learning for identifying cis-regulatory elements and other applications
☆34Updated 8 years ago
Alternatives and similar repositories for DECRES
Users that are interested in DECRES are comparing it to the libraries listed below
Sorting:
- ☆51Updated 2 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 6 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆83Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆49Updated 2 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61Updated 9 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆108Updated 2 years ago
- ☆57Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Normalization for single cell RNA-seq data☆49Updated 5 months ago
- ☆42Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- ☆31Updated 6 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Signed LD profile regression code☆18Updated 3 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated last year
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago