Computational biology utility scripts
☆19Apr 16, 2025Updated 11 months ago
Alternatives and similar repositories for utility
Users that are interested in utility are comparing it to the libraries listed below
Sorting:
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- ☆15Mar 25, 2016Updated 9 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 5 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.☆11May 9, 2020Updated 5 years ago
- Publication and sharing with Jupyter notebooks for reproducible research☆10May 10, 2019Updated 6 years ago
- small rna-seq analysis package☆30Nov 7, 2022Updated 3 years ago
- Python libraries and utilities for computational biology☆37Jun 6, 2014Updated 11 years ago
- Tao Liu's open source libraries for bioinformatics (unstable, pre-alpha)☆26Mar 23, 2021Updated 4 years ago
- ☆15May 31, 2020Updated 5 years ago
- ☆27May 29, 2023Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Raspberry Pi NFC tag reader☆10Apr 16, 2017Updated 8 years ago
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 4 years ago
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Jul 19, 2021Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆54Apr 9, 2019Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.☆16Jan 4, 2023Updated 3 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Mar 11, 2026Updated last week
- Simple Python program to perform codon optimization or heterology calculations.☆11Apr 13, 2021Updated 4 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 7 months ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Efficient retrieval head analysis with triton flash attention that supports topK probability☆13Jun 15, 2024Updated last year
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- Material for the RNAseq course☆10Aug 8, 2019Updated 6 years ago
- Extended Supervised Tracking and Classifying System (ExSTraCS) Version 2.0.2 Beta (Python 3.5)☆16Jun 28, 2019Updated 6 years ago
- ☆12Feb 12, 2024Updated 2 years ago
- Co-expression network management based on WGCNA + k-means☆21May 11, 2021Updated 4 years ago
- Missing value imputation and evaluation, especially for metabolomics data sets☆19Jun 27, 2018Updated 7 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 5 months ago
- ☆13Updated this week
- ☆13Oct 7, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 5 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- ☆28Updated this week
- ☆17Updated this week
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago