davek44 / utilityLinks
Computational biology utility scripts
☆19Updated 5 months ago
Alternatives and similar repositories for utility
Users that are interested in utility are comparing it to the libraries listed below
Sorting:
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆44Updated 9 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 11 months ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 8 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 2 months ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆28Updated last month
- Core functionality of the CGAT code☆33Updated last month
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- ☆42Updated 7 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆32Updated last week
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 11 years ago
- Python interface to amino acid properties and IEDB☆57Updated 11 months ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆33Updated 8 months ago
- Efficient handling of FASTQ files from Python☆51Updated last month