davek44 / utility
Computational biology utility scripts
☆19Updated 6 months ago
Alternatives and similar repositories for utility:
Users that are interested in utility are comparing it to the libraries listed below
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated last year
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Downloader for ENCODE☆31Updated 4 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆25Updated 7 months ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 10 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 8 months ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆21Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Core functionality of the CGAT code☆33Updated this week
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆13Updated 8 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- ☆29Updated 6 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- ☆41Updated 6 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆34Updated 8 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year