Computational biology utility scripts
☆19Apr 16, 2025Updated 10 months ago
Alternatives and similar repositories for utility
Users that are interested in utility are comparing it to the libraries listed below
Sorting:
- Automated and variant-aware CRISPR/Cas9 editing outcome predictor☆10Sep 10, 2021Updated 4 years ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 4 months ago
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- Python libraries and utilities for computational biology☆37Jun 6, 2014Updated 11 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 5 years ago
- ☆15Mar 25, 2016Updated 9 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 4 years ago
- Deep Feature Interaction Maps (DFIM)☆54Apr 9, 2019Updated 6 years ago
- Accompanying repository for GkmExplain paper☆23Aug 20, 2020Updated 5 years ago
- ☆27May 29, 2023Updated 2 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Conditional out-of-distribution prediction☆62Aug 2, 2024Updated last year
- ☆13Updated this week
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆12Feb 18, 2026Updated last week
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Jul 26, 2015Updated 10 years ago
- ☆12Nov 7, 2025Updated 3 months ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 4 months ago
- ☆10Aug 29, 2023Updated 2 years ago
- A tool that lauches docker jobs on Amazon EC2.☆10May 7, 2019Updated 6 years ago
- A python library for creating simulated regulatory DNA sequences☆39Feb 22, 2023Updated 3 years ago
- Toolkit for single-cell DNA methylation analysis.☆46Updated this week
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- A system used to request absentee ballots in the state of Virginia. 📬☆10Sep 14, 2023Updated 2 years ago
- ☆11Feb 18, 2022Updated 4 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15May 3, 2022Updated 3 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- SODEN: A Scalable Continuous-Time Survival Model through Ordinary Differential Equation Networks☆14Mar 2, 2023Updated 3 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- The Zhang's lab aims to provide a model or GUI of algorithm for example and further studies. ALL of them are used just for research, but…☆10Apr 13, 2020Updated 5 years ago
- ☆16Jan 30, 2026Updated last month
- Applied Quantitative Methods course at the College of Charleston☆21Feb 19, 2026Updated last week
- Bash script to download all lecture videos & notes for a particular course on Coursera.org.☆13Dec 25, 2015Updated 10 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago