7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
☆13Oct 15, 2025Updated last year
Alternatives and similar repositories for sevenC
Users that are interested in sevenC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- ClusterScan, search for clusters of features in a given annotation.☆10Aug 26, 2021Updated 5 years ago
- An R library for accurate and fast calculations of Precision-Recall and ROC curves☆47Sep 14, 2026Updated last month
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 9 months ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆13Feb 26, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆13Feb 16, 2019Updated 7 years ago
- ☆83Feb 3, 2021Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆53Apr 9, 2019Updated 7 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆16Sep 4, 2026Updated last month
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 8 months ago
- Machine learning on electronic health records☆11Jan 29, 2018Updated 8 years ago
- PHOsphoproteomic dissecTiOn using Networks☆16Jan 25, 2021Updated 5 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆35Sep 4, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆19May 9, 2024Updated 2 years ago
- MAW: a suite on the computation and application of Minimal Absent Words☆18Nov 1, 2021Updated 4 years ago
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆86Oct 1, 2026Updated 2 weeks ago
- phenol: Phenotype ontology library☆26Jun 30, 2026Updated 3 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆190Jul 13, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated 2 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Source code for `nVenn`☆16Jul 16, 2026Updated 3 months ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Aug 19, 2026Updated last month
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Port of libraries or functionalities from other languages to JavaScript☆14Apr 29, 2017Updated 9 years ago
- Visualization methods for omics dataset quality control☆11Updated this week
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 3 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆38Aug 28, 2015Updated 11 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆19Jan 17, 2018Updated 8 years ago