ibn-salem / sevenC
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
☆12Updated 6 years ago
Alternatives and similar repositories for sevenC:
Users that are interested in sevenC are comparing it to the libraries listed below
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- ☆19Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- Chromatin segmentation in R☆19Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆13Updated last year
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Identify cell types and pathways affected by genetic risk loci.☆36Updated 11 months ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- ☆28Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 3 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year