ibn-salem / sevenCLinks
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
☆13Updated 6 years ago
Alternatives and similar repositories for sevenC
Users that are interested in sevenC are comparing it to the libraries listed below
Sorting:
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆19Updated 7 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 7 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)☆9Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago