Alternatives and similar repositories for GaKCo-SVM

Users that are interested in GaKCo-SVM are comparing it to the libraries listed below

• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated last year
• uio-bmi / pyvg
  Importing vg json graphs to Python data structures.
  ☆11Updated 4 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 5 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 7 years ago
• langmead-lab / vargas
  ☆25Updated last week
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated 2 weeks ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 months ago
• mklarqvist / djinn
  C++ library for analysing and storing large-scale cohorts of sequence variant data
  ☆17Updated 6 years ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last month
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 5 years ago
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆23Updated 5 years ago
• ETCHING-team / ETCHING
  Ultra-fast, high-performing structural variation (SV) detector
  ☆23Updated 2 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• cinquin / MEME
  MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
  ☆11Updated 8 years ago
• Pfern / PANGenomics
  ☆15Updated 7 years ago
• arshajii / lava
  LAVA: Lightweight Assignment of Variant Alleles
  ☆17Updated 7 years ago
• microsoft / BindVAE
  Variational Auto Encoders for learning binding signatures of transcription factors
  ☆12Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• KChen-lab / Texomer
  Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
  ☆21Updated 5 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆31Updated 10 months ago
• mlinderm / npsv
  Non-parametric structural variant genotyper
  ☆15Updated 3 years ago
• jmonlong / parakit
  Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.
  ☆10Updated last week
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• hitbc / LAMSA
  Long Approximate Matches-based Split Aligner
  ☆13Updated 8 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆28Updated 2 years ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• gui11aume / mmp
  MEM mapper prototype
  ☆13Updated 4 years ago
• NCBI-Codeathons / SWIGG
  A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
  ☆22Updated 5 years ago
• lh3 / lh3-snippets
  ☆14Updated 5 years ago