ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
☆14Aug 28, 2019Updated 6 years ago
Alternatives and similar repositories for GaKCo-SVM
Users that are interested in GaKCo-SVM are comparing it to the libraries listed below
Sorting:
- ☆11Dec 9, 2022Updated 3 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- ☆11Aug 2, 2025Updated 7 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- ☆26Aug 10, 2021Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Transform data from RCSB Protein Data Bank for secondary structure prediction☆12Feb 20, 2019Updated 7 years ago
- High-level API for storing and querying sequence variant data☆20May 24, 2019Updated 6 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- A whole-genome and alignment-free prokaryotic phylogeny tool☆23Mar 9, 2025Updated last year
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Pan gGnome Viewer☆10Jul 10, 2025Updated 8 months ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Hey, I bring my coffee with me. Here's what I use.☆14Mar 21, 2018Updated 8 years ago
- A library for counting small kmer frequencies in nucleotide sequences.☆27Oct 29, 2024Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 8 months ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 5 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- ☆24Aug 25, 2025Updated 6 months ago
- GBWT-based handle graph☆31Updated this week
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago