QData / GaKCo-SVM
ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
☆14Updated 5 years ago
Alternatives and similar repositories for GaKCo-SVM:
Users that are interested in GaKCo-SVM are comparing it to the libraries listed below
- GRAph-based Finding of Individual Motif Occurrences☆30Updated 5 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 5 years ago
- Application for semi-automated genomic annotation.☆13Updated 6 months ago
- ☆10Updated 3 years ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated 2 years ago
- Training and testing of DeepSEA models.☆14Updated 9 years ago
- Construct a Physical Map from Linked Reads☆18Updated 9 months ago
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- ☆20Updated 4 years ago
- ☆24Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆43Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago
- GBWT-based handle graph☆31Updated last week
- Empirical Bayes methods for single cell data☆15Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆12Updated 10 months ago
- ☆23Updated 3 years ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆21Updated 6 years ago
- We have moved to https://github.com/limix/limix.☆24Updated 7 years ago
- Accompanying repository for GkmExplain paper☆22Updated 4 years ago