Sanger Cellular Genetics single-cell ATAC-seq pipeline.
☆13Aug 25, 2023Updated 2 years ago
Alternatives and similar repositories for cellatac
Users that are interested in cellatac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 6 months ago
- scover☆24Nov 3, 2023Updated 2 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆29Oct 4, 2021Updated 4 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- The Self-Assembling-Manifold (SAM) algorithm.☆47Dec 26, 2025Updated 2 months ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- Network inference by fusing data from diverse distributions☆14Nov 25, 2016Updated 9 years ago
- ☆26May 16, 2025Updated 10 months ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated 6 months ago
- ☆14Oct 11, 2019Updated 6 years ago
- Multi-resolution Variational Inference☆23Mar 16, 2026Updated last week
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆15Feb 5, 2026Updated last month
- ☆12Aug 20, 2024Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- ☆15May 19, 2025Updated 10 months ago
- Cookiecutter template for scverse☆88Mar 16, 2026Updated last week
- Code for the ICML 2023 paper "Geometric Autoencoders - What You See is What You Decode"☆17Jul 28, 2023Updated 2 years ago
- My youtube programming scripts☆59Jan 16, 2025Updated last year
- Repository for the code assignment of the Deep Learning 1 course, Fall 2021 edition☆10Oct 31, 2022Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Mar 20, 2023Updated 3 years ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq☆16May 18, 2023Updated 2 years ago
- Quick pre-QC knee plots for barcode based scRNAseq data☆12Dec 8, 2018Updated 7 years ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 5 years ago
- ☆22May 6, 2022Updated 3 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- Scripts for using scanpy☆39Oct 20, 2025Updated 5 months ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆15Apr 27, 2020Updated 5 years ago
- ☆13Jun 18, 2018Updated 7 years ago
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Uses rust-cpython to provide a convenient interface to Python's matplotlib from Rust☆20Jan 2, 2016Updated 10 years ago