cellgeni / cellatacLinks
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
☆12Updated last year
Alternatives and similar repositories for cellatac
Users that are interested in cellatac are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- ☆32Updated 5 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- ☆35Updated 4 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆34Updated last year
- Single-cell Case Control Analysis☆50Updated 8 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- scWGCNA☆61Updated 2 years ago
- ☆49Updated 11 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- ☆41Updated 4 years ago
- ☆41Updated last month
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Clone identification from single-cell data☆62Updated 2 years ago
- Functional Inference of Gene Regulation☆45Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆52Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago