cellgeni / cellatacLinks
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
☆13Updated 2 years ago
Alternatives and similar repositories for cellatac
Users that are interested in cellatac are comparing it to the libraries listed below
Sorting:
- ☆48Updated 2 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- ☆33Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- ☆59Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- ☆17Updated last year
- scRNA-seq cell type identification☆44Updated 6 years ago
- ☆29Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆34Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last week
- ☆40Updated 5 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 9 months ago
- ☆54Updated last year
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆12Updated last year