Alternatives and similar repositories for gopeaks

Users that are interested in gopeaks are comparing it to the libraries listed below

• maxsonBraunLab / cutTag-pipeline
  Pipeline for Cut&Tag analysis
  ☆21Updated last month
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆33Updated 6 years ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last month
• mbassalbioinformatics / CnRAP
  Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
  ☆18Updated last week
• YosefLab / ImpulseDE2
  ☆38Updated 2 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆58Updated 2 weeks ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆33Updated 2 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 10 months ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆51Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆15Updated last year
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆30Updated 3 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 10 months ago
• stjude / ChIPseqSpikeInFree
  A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications
  ☆32Updated 3 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆22Updated 6 months ago
• Danko-Lab / proseq2.0
  Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
  ☆27Updated 5 months ago
• BMILAB / scAPAtrap
  ☆20Updated last year
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• KoesGroup / Snakemake_ChIPseq_PE
  Pipeline for the analysis of PE ChIP-seq data
  ☆14Updated 4 years ago
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆44Updated 4 years ago
• sklasfeld / DANPOS3
  Updated DANPOS2 to work with python3
  ☆21Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆41Updated last year
• crazyhottommy / pyflow-scATACseq
  snakemake workflow for post-processing scATACseq data
  ☆21Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• rhysnewell / ChIP-R
  Assessing the reproducibility of proccessed ChIP-seq peaks
  ☆12Updated 4 years ago