maxsonBraunLab / gopeaksLinks
Peak caller for CUT&TAG data
☆28Updated 2 years ago
Alternatives and similar repositories for gopeaks
Users that are interested in gopeaks are comparing it to the libraries listed below
Sorting:
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Pipeline for Cut&Tag analysis☆21Updated 3 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- workshop website on readthedocs☆19Updated this week
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ☆38Updated 2 years ago
- ☆23Updated 4 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 9 months ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- Tutorial Website☆59Updated 4 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 2 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- Docker container for genomics analyses in R.☆25Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago