maxsonBraunLab / gopeaksLinks
Peak caller for CUT&TAG data
☆30Updated 3 years ago
Alternatives and similar repositories for gopeaks
Users that are interested in gopeaks are comparing it to the libraries listed below
Sorting:
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- Pipeline for Cut&Tag analysis☆25Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- binned motif enrichment analysis and visualisation☆45Updated last week
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆42Updated 3 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- ☆34Updated 2 months ago
- workshop website on readthedocs☆21Updated 4 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 9 months ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- Tutorial Website☆63Updated 5 years ago
- 🧬 Gene analysis toolkit based on R☆61Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆96Updated last week
- An R package for time course sequencing data analysis☆21Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆53Updated last year
- ☆29Updated 2 years ago
- RAGE-seq scripts☆18Updated 4 years ago