maxsonBraunLab / gopeaks
Peak caller for CUT&TAG data
☆25Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for gopeaks
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- RNA editing tests☆16Updated 4 years ago
- Pipeline for Cut&Tag analysis☆17Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Scripts to install as a Bioconda package for making workflows☆18Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Tutorial Website☆53Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- ☆17Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆14Updated 3 years ago
- R package wrapping bedtools☆37Updated 2 months ago
- ☆27Updated 3 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- ☆37Updated 2 years ago
- workshop website on readthedocs☆19Updated last week
- ☆15Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆15Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 9 months ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆18Updated 3 years ago
- RiboPlotR package for Ribo-plot☆13Updated last year
- ☆41Updated 3 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- ☆14Updated 2 years ago
- An R interface to the MEME Suite☆46Updated last month