kundajelab / ProCapNet
Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.
☆11Updated 3 weeks ago
Related projects: ⓘ
- ☆20Updated this week
- ☆23Updated 3 months ago
- Code for reproducing the Sei manuscript results☆15Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆17Updated last month
- TF analysis from epigenetic and Hi-C data☆16Updated 7 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆12Updated 10 months ago
- A python package for chromVAR☆26Updated last year
- A method for analyzing scATAC-seq experiments.☆23Updated 2 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆25Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆29Updated 2 years ago
- Regulatory networks with Direct Information in python☆38Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆27Updated 9 months ago
- Nextflow implementation of SpliZ☆12Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆26Updated last year
- ☆31Updated 2 weeks ago
- ☆38Updated last month
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆10Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- ☆15Updated 3 months ago
- Single-cell copy number calling and event history reconstruction.☆21Updated last month
- Toolkit for single-cell DNA methylation analysis.☆37Updated last month
- ☆34Updated 4 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 years ago
- ☆10Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆24Updated 5 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆19Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 2 months ago
- Information-based dimensionality reduction☆29Updated last month