Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.
☆22Sep 18, 2026Updated this week
Alternatives and similar repositories for ProCapNet
Users that are interested in ProCapNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 2 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated last month
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆31Dec 13, 2024Updated last year
- systematic explanation of attribution-based mechanisms for regulatory genomics☆18Updated this week
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆81Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Jan 23, 2025Updated last year
- ☆24Jul 27, 2026Updated last month
- ☆52Mar 22, 2026Updated 5 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆25Sep 12, 2026Updated last week
- Biological sequence analysis for the modern age.☆311Updated this week
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- ☆15Dec 11, 2022Updated 3 years ago
- ☆50Sep 11, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆27May 29, 2023Updated 3 years ago
- Cherimoya is a lightweight sequence-to-function (S2F) model that is small, fast, and easy to use. Now usable by agents.☆61Sep 11, 2026Updated last week
- ☆12Jan 31, 2023Updated 3 years ago
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆26Sep 11, 2026Updated last week
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆93Sep 24, 2025Updated 11 months ago
- surrogate quantitative interpretability for deepnets☆25Aug 28, 2026Updated 3 weeks ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Aug 21, 2026Updated 3 weeks ago
- AlphaGenome PyTorch port☆161Updated this week
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Machine learning methods for DNA sequence analysis.☆66Updated this week
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 4 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆15Oct 16, 2025Updated 11 months ago
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆251Jun 9, 2026Updated 3 months ago
- ☆29Dec 10, 2025Updated 9 months ago
- ☆14Sep 1, 2024Updated 2 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆25Aug 26, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Jul 5, 2019Updated 7 years ago
- RNA-seq prediction with deep convolutional neural networks.☆264Updated this week
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- ☆19Oct 21, 2024Updated last year
- ☆13Nov 19, 2021Updated 4 years ago
- ☆11Aug 10, 2023Updated 3 years ago
- ☆12Feb 6, 2023Updated 3 years ago