Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
☆21Oct 7, 2021Updated 5 years ago
Alternatives and similar repositories for pyWNN
Users that are interested in pyWNN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated 2 months ago
- RIDDEN command-line interface: Data-driven inference of receptor activity for cell-cell communication studies☆13Mar 29, 2025Updated last year
- ☆12Jan 31, 2023Updated 3 years ago
- Code repository associated with our recent work: Spatial RNA-Sequencing of Microbiome-Host Interactions at One Micron Resolution☆10Jan 21, 2026Updated 9 months ago
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 13, 2024Updated 2 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 3 months ago
- Skip the peaks and expose RNA-binding in CLIP data☆10Updated this week
- ☆12Sep 7, 2023Updated 3 years ago
- PRISM source code public releases☆11Feb 8, 2021Updated 5 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This …☆17Nov 12, 2024Updated last year
- ☆21Dec 15, 2023Updated 2 years ago
- Alignment, quantification and fusion prediction from long RNA reads☆10Apr 11, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Nov 20, 2025Updated 11 months ago
- ☆17Updated this week
- ☆19Oct 21, 2024Updated 2 years ago
- ☆19Mar 21, 2024Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- A module for working with snap files in Python☆38May 5, 2020Updated 6 years ago
- Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor☆10Mar 19, 2026Updated 7 months ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- SKERA - Deconcat PacBio reads☆10Oct 19, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MGcount github repository☆14Jan 19, 2023Updated 3 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆23Oct 4, 2026Updated last month
- ☆51Updated this week
- ☆25Oct 2, 2026Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆43Jul 6, 2023Updated 3 years ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆26Oct 3, 2023Updated 3 years ago
- A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data☆10Jun 3, 2026Updated 5 months ago
- Network Reverse Engineering through AP inference of Mutual Information☆91Mar 6, 2023Updated 3 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated last year
- GRiNCH: Graph-Regularized NMF and Clustering for Hi-C☆10Mar 15, 2024Updated 2 years ago
- ☆84Dec 11, 2023Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- 10x single cell short- and long-read RNA sequencing☆12Jan 17, 2024Updated 2 years ago
- Reusable tools for working with next-generation sequencing (NGS) data☆12Oct 7, 2024Updated 2 years ago
- ☆20May 14, 2025Updated last year