dylkot / pyWNNLinks
Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
☆17Updated 3 years ago
Alternatives and similar repositories for pyWNN
Users that are interested in pyWNN are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆35Updated 8 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆35Updated 2 months ago
- ☆32Updated 4 months ago
- ☆26Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆49Updated 10 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆31Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- ☆30Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated last month
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- cell type specific, trait-associated gene regulation☆26Updated 2 months ago
- A python package for chromVAR☆28Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated last month
- Benchmark of GRNs using the GRETA pipeline☆24Updated 2 months ago
- ☆12Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- pseudobulking on an AnnData object☆32Updated 2 months ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated last month
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- scWGCNA☆60Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year
- ☆10Updated last year