dylkot / pyWNN
Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
☆17Updated 3 years ago
Alternatives and similar repositories for pyWNN:
Users that are interested in pyWNN are comparing it to the libraries listed below
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- The scripts used for the analyses in TOME project☆24Updated 5 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆30Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 2 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- ☆35Updated 8 months ago
- ☆30Updated 3 months ago
- A python package for chromVAR☆27Updated 2 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Skip the peaks and expose RNA-binding in CLIP data☆9Updated 5 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated last week
- A method for analyzing scATAC-seq experiments.☆30Updated 2 months ago
- High-definition modeling of chromatin + transcriptomics data☆23Updated 3 weeks ago
- ☆49Updated 9 months ago
- ☆35Updated 2 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- ☆12Updated 2 years ago
- Benchmark of GRNs using the GRETA pipeline☆24Updated last month
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 8 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆16Updated 3 months ago
- ☆51Updated 7 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year