cschin / Write_A_Genome_Assembler_With_IPython
The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
☆31Updated 6 years ago
Alternatives and similar repositories for Write_A_Genome_Assembler_With_IPython:
Users that are interested in Write_A_Genome_Assembler_With_IPython are comparing it to the libraries listed below
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- Convert HAL to VG☆22Updated 7 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆20Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated last month
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 4 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- This is the Haplotypo repository☆20Updated 9 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- MIRA sequence assembler☆28Updated 2 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago