cschin / Write_A_Genome_Assembler_With_IPythonLinks
The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
☆30Updated 7 years ago
Alternatives and similar repositories for Write_A_Genome_Assembler_With_IPython
Users that are interested in Write_A_Genome_Assembler_With_IPython are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆34Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Hitting associations with k-mers☆44Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- GBWT-based handle graph☆31Updated last week
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- ☆28Updated 2 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago