Deep neural network for predicting methylation states of single cells
☆13Jan 19, 2017Updated 9 years ago
Alternatives and similar repositories for deepcpg_legacy
Users that are interested in deepcpg_legacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Embed python in R☆11Sep 5, 2014Updated 11 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆13Sep 21, 2017Updated 8 years ago
- utilities for indexing and sequence extraction from FASTA files☆59May 15, 2021Updated 5 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆32Jun 27, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 📝 GitHub Activity Feed RStudio Addin☆14Jun 2, 2018Updated 7 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Distributed matrix classes and methods for the pbdR project.☆17Sep 29, 2024Updated last year
- Dev repository for R package lazyarray: A lightning tool to lazy load Giga-Byte-level data into memory☆19Jun 21, 2023Updated 2 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 5 months ago
- The repository is an R package about ensemble learning algorithms based on SVM for my Google Summer of Code 2015 project☆12Jun 5, 2024Updated last year
- Deep Learning library for the Julia language☆16Jul 13, 2015Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- The official repository of the Bioconductor 2019 Conference Workshops☆24Mar 15, 2023Updated 3 years ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- NLM Medical Text Indexer (MTI)☆10May 18, 2022Updated 4 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- A course project that detect cells in image by a simple full convolution neural network. The project is driven by TensorFlow.☆20Jun 6, 2017Updated 8 years ago
- Lazy evaluated vectors using the ALTREP framework☆16Aug 1, 2019Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19May 9, 2026Updated 2 weeks ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- Materials for the Wednesday Afternoon Machine Learning workshop☆19Jun 5, 2015Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A deep learning library for Julia based on Caffe☆33Sep 26, 2015Updated 10 years ago
- Take command of your set enrichment analyses.☆23Updated this week
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- ☆11Apr 6, 2017Updated 9 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆18Feb 26, 2026Updated 2 months ago
- R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions☆21Sep 30, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆51Jun 26, 2018Updated 7 years ago
- Theano-based implementation of the efficient sparse-coding algorithms by Honglak Lee et al. (2006)☆12Jan 4, 2016Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- ☆17Oct 20, 2017Updated 8 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- ☆12Mar 21, 2026Updated 2 months ago