Deep neural network for predicting methylation states of single cells
☆13Jan 19, 2017Updated 9 years ago
Alternatives and similar repositories for deepcpg_legacy
Users that are interested in deepcpg_legacy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tutorial on breast cancer cell classification using deep learning in Tensorflow☆13Sep 21, 2017Updated 9 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Jul 2, 2026Updated 3 months ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆32Jun 27, 2017Updated 9 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 10 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Dev repository for R package lazyarray: A lightning tool to lazy load Giga-Byte-level data into memory☆19Jun 21, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the TileDBArray package.☆11Apr 10, 2026Updated 6 months ago
- LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync☆10Oct 17, 2016Updated 9 years ago
- Notes from Simons Institute program "Foundations of Machine Learning"☆13May 5, 2017Updated 9 years ago
- Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications☆46Apr 19, 2019Updated 7 years ago
- A course project that detect cells in image by a simple full convolution neural network. The project is driven by TensorFlow.☆20Jun 6, 2017Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- Materials for the Wednesday Afternoon Machine Learning workshop☆19Jun 5, 2015Updated 11 years ago
- Chromatin Accessibility Prediction via Convolutional Long Short-Term Memory Networks with k-mer Embedding☆15Nov 5, 2018Updated 7 years ago
- A deep learning library for Julia based on Caffe☆33Sep 26, 2015Updated 11 years ago
- A deep learning package for predicting TF binding☆43Jan 23, 2020Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- ☆11Apr 6, 2017Updated 9 years ago
- ☆51Jun 26, 2018Updated 8 years ago
- Understanding sequence conservation with deep learning☆20Mar 19, 2017Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Distributed matrix classes and methods for the pbdR project.☆17Sep 29, 2024Updated 2 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆20Feb 26, 2026Updated 7 months ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- ☆17Oct 20, 2017Updated 8 years ago
- Benchmarks of the H2O Ensemble R interface (H2O 2.0).☆14Nov 4, 2020Updated 5 years ago
- R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions☆22Aug 25, 2026Updated last month
- Single-Cell Spatial Explorer☆14Dec 14, 2023Updated 2 years ago
- Cell detection using a convolutional neueral network☆27Apr 17, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆16Apr 13, 2021Updated 5 years ago
- Some experiments into explaining complex black box ensemble predictions.☆74Jan 21, 2020Updated 6 years ago
- Deprecated: use the official mirror: https://github.com/rpy2/rpy2☆15Mar 4, 2019Updated 7 years ago
- Spark implementation of Ford-Fulkerson algorithm☆14Feb 11, 2018Updated 8 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆12Jul 13, 2026Updated 3 months ago
- Countdown timer for R Markdown (like for presentations with exercise/break times)☆15Aug 15, 2019Updated 7 years ago