dapogon / cellcoalLinks
CellCoal: coalescent simulation of single-cell NGS genotypes
☆15Updated 8 months ago
Alternatives and similar repositories for cellcoal
Users that are interested in cellcoal are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Updated 8 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 10 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Identification of differentially methylated genes in biomedical data☆15Updated 6 years ago
- DriverPower☆26Updated 8 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- GWAS and rare variants tests at high speed using regenie☆15Updated 9 months ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)☆20Updated 5 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Updated 3 weeks ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated this week
- a set of NGS pipelines☆24Updated 3 weeks ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Updated 7 years ago