dapogon / cellcoal
CellCoal: coalescent simulation of single-cell NGS genotypes
☆14Updated last month
Related projects ⓘ
Alternatives and complementary repositories for cellcoal
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆17Updated last year
- A deme-based, spatially explicit model of intra-tumour population genetics☆20Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆16Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 2 months ago
- Evolutionary frequency visualization tool of temporal data☆21Updated 2 years ago
- Single-cell Iso Prep☆12Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆28Updated 4 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated 7 months ago
- Toolkit for single-cell copy number analysis☆18Updated last month
- Transcript quantification import with automatic metadata detection☆67Updated last month
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 5 months ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 weeks ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆26Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆18Updated 7 years ago
- DriverPower☆26Updated 5 months ago
- ☆13Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆18Updated last year