CellCoal: coalescent simulation of single-cell NGS genotypes
☆15Feb 10, 2025Updated last year
Alternatives and similar repositories for cellcoal
Users that are interested in cellcoal are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Jan 8, 2026Updated 2 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- ☆25Mar 3, 2020Updated 6 years ago
- LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models☆20Updated this week
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 6 years ago
- A versatile simulation engine for stochastic population dynamics models.☆23Nov 11, 2022Updated 3 years ago
- Source code of the Bgee pipeline used to build the Bgee database☆12Mar 9, 2026Updated 2 weeks ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- ☆13Mar 12, 2026Updated 2 weeks ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for learnable topological features for phylogenetic inference via graph neural networks☆10Mar 3, 2023Updated 3 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Reduced-Rejection-Rate Monte Carlo for Ising spin models☆18Mar 16, 2022Updated 4 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆26Jan 23, 2026Updated 2 months ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Preprocessing sequencing data for allele-specific analysis☆12Mar 11, 2025Updated last year
- ☆12Feb 7, 2017Updated 9 years ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆27Aug 27, 2025Updated 6 months ago
- ☆12Mar 28, 2025Updated 11 months ago
- Phylogenetic inference using Stan☆23Mar 6, 2025Updated last year
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 10 months ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Feb 27, 2026Updated 3 weeks ago
- ☆21Dec 30, 2025Updated 2 months ago
- Single-cell copy number calling and event history reconstruction.☆28Dec 21, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Python library for converting between BioNLP formats☆22Apr 20, 2023Updated 2 years ago
- Sequence simulator☆55Feb 3, 2025Updated last year
- Automatically use the latest “vX.X.X” tag as version in your Python package☆13Updated this week
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆19Mar 11, 2024Updated 2 years ago
- Creation of a Web application using R and Shiny for prediction of Heart Disease using Machine Learning☆16Jun 15, 2018Updated 7 years ago