Generate a spatial catalogue from multiplexed imaging data
☆19Jun 12, 2025Updated 11 months ago
Alternatives and similar repositories for SpaceCat
Users that are interested in SpaceCat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Differential spatial enrichment across conditions☆27Oct 1, 2025Updated 7 months ago
- ☆66May 12, 2026Updated last week
- Feature selection for preserving biological trajectories in single-cell data☆22May 29, 2025Updated 11 months ago
- Official Implementation of GMR-Conv☆17Feb 15, 2026Updated 3 months ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆23Jul 8, 2025Updated 10 months ago
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis☆57Jan 30, 2026Updated 3 months ago
- ☆10Jan 24, 2021Updated 5 years ago
- RStudio add-in to bookmark lines of R code☆18Apr 18, 2019Updated 7 years ago
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Jun 1, 2023Updated 2 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Documentation for the cellxgene product☆17Sep 13, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆33May 4, 2025Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 4 months ago
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 4 years ago
- Fully indexable dictionaries - access/rank/select operations☆13Sep 10, 2018Updated 7 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- ☆17Mar 18, 2025Updated last year
- Parametric cure models for flexsurvreg☆16Feb 15, 2025Updated last year
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- ☆18Apr 10, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 8 years ago
- ☆34Oct 10, 2025Updated 7 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Integrated pipeline for multiplexed image analysis☆105Jan 7, 2026Updated 4 months ago
- ☆36Apr 21, 2026Updated 3 weeks ago
- Code to reproduce TNBC analysis and figures☆24Jun 13, 2022Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Simple color conversion and perceptual (DeltaE CIE 2000) difference☆13Apr 27, 2026Updated 3 weeks ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- external memory data structure playground☆25Dec 15, 2011Updated 14 years ago
- pCMF R package☆13Apr 16, 2019Updated 7 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated 2 years ago
- ☆47Jul 24, 2025Updated 9 months ago