Alternatives and similar repositories for guide-counter:

Users that are interested in guide-counter are comparing it to the libraries listed below

• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated this week
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• pachterlab / sircel
  Identify cell barcodes from single-cell genomics sequencing experiments
  ☆43Updated 3 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆37Updated 4 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆27Updated 3 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• ExpressionAnalysis / HLAProfiler
  Using k-mers to call HLA alleles in RNA sequencing data
  ☆22Updated 6 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 2 weeks ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• Novartis / pisces
  PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …
  ☆29Updated 10 months ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated 10 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• liulab-dfci / CHIPS
  A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
  ☆20Updated 3 years ago
• gagneurlab / absplice
  ☆38Updated 7 months ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆28Updated last year
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 9 months ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆8Updated 6 years ago
• ding-lab / somaticwrapper
  Detect somatic variants from tumor and normal WGS/WXS data
  ☆15Updated last month
• pachterlab / fastQpick
  ☆25Updated 2 months ago
• uubram / RTCR
  A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
  ☆22Updated last year
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago