Wedge-lab / battenbergLinks
Battenberg R package for subclonal copynumber estimation
☆95Updated 2 months ago
Alternatives and similar repositories for battenberg
Users that are interested in battenberg are comparing it to the libraries listed below
Sorting:
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- ☆75Updated 2 years ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆83Updated 9 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 3 weeks ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated last year
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Updated 5 years ago
- ☆22Updated 2 months ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆116Updated 2 weeks ago
- An R package to time somatic mutations☆65Updated 5 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- Tumor Mutational Burden☆63Updated last week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 4 months ago
- ☆119Updated 2 years ago
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- BISulfite-seq CUI Toolkit☆70Updated 4 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆113Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆77Updated last week
- R package containing useful functions for mutational signature analysis☆86Updated last week
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year