Alternatives and similar repositories for battenberg

Users that are interested in battenberg are comparing it to the libraries listed below

• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆71Updated 5 years ago
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆75Updated last year
• broadinstitute / PhylogicNDT
  ☆82Updated 9 months ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆72Updated last year
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆53Updated 5 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆100Updated 4 years ago
• parklab / ShatterSeek
  ☆74Updated 2 years ago
• hartwigmedical / pipeline5
  ☆22Updated 2 months ago
• TrinityCTAT / ctat-mutations
  Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
  ☆77Updated 2 weeks ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• SigProfilerSuite / SigProfilerMatrixGenerator
  SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…
  ☆116Updated this week
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆63Updated 6 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆57Updated 4 months ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆61Updated 5 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆91Updated 5 months ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆121Updated 2 years ago
• getzlab / deTiN
  DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…
  ☆53Updated 3 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆65Updated 5 years ago
• CGATOxford / CGATPipelines
  Collection of CGAT NGS Pipelines
  ☆43Updated 7 years ago
• sztup / scarHRD
  ☆119Updated 2 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated last year
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆54Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆55Updated 5 years ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆44Updated 8 years ago
• Nik-Zainal-Group / signature.tools.lib
  R package containing useful functions for mutational signature analysis
  ☆87Updated this week
• SigProfilerSuite / SigProfilerPlotting
  SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…
  ☆52Updated last week
• data61 / gossamer
  Gossamer bioinformatics suite
  ☆22Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆117Updated 3 months ago