ICGC-TCGA-PanCancer / pcawg_delly_workflow
A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
☆18Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for pcawg_delly_workflow
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆24Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- TOPMed Freeze 3 variant calling pipeline☆10Updated 5 years ago
- ☆51Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 11 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 5 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆21Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- See the main fork of this repository here >>>☆38Updated 2 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Integrated copy number variation detection toolset☆25Updated 4 years ago
- A tool to call somatic single nucleotide variants.☆40Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- ☆23Updated 5 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Liftover VCF files☆16Updated 7 years ago
- ☆25Updated 6 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated last year
- Evaluation of phasing performance☆21Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago