ICGC-TCGA-PanCancer / pcawg_delly_workflow
A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
☆18Updated 5 years ago
Alternatives and similar repositories for pcawg_delly_workflow:
Users that are interested in pcawg_delly_workflow are comparing it to the libraries listed below
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- TOPMed Freeze 3 variant calling pipeline☆9Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Finding cryptic relationships to boost disease gene detection☆12Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 3 weeks ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Multi-sample somatic variant caller☆49Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- ☆30Updated 3 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 5 years ago
- A tool to call somatic single nucleotide variants.☆41Updated 9 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- This repository contains course materials from JAX-BD2K workshop.☆31Updated 5 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 3 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated last week
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- ☆34Updated 4 years ago
- TOPMed analysis pipeline☆52Updated last year
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆33Updated 10 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆64Updated last month