Alternatives and similar repositories for demon_model

Users that are interested in demon_model are comparing it to the libraries listed below

• raphael-group / chisel
  CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
  ☆40Updated 7 months ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 6 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• cbg-ethz / BnpC
  Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
  ☆20Updated 11 months ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆53Updated 3 weeks ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 3 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆30Updated 3 years ago
• nimwegenLab / cellstates
  Finding gene expression states in scRNA-seq data
  ☆51Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆33Updated 6 years ago
• semraulab / phiclust
  A clusterability measure for scRNA-seq data.
  ☆18Updated 3 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• cbg-ethz / scIsoPrep
  Single-cell Iso Prep
  ☆16Updated last year
• hms-dbmi / scw
  HSCI/Catalyst Single-cell RNA-Seq Workshop
  ☆19Updated 6 years ago
• raphael-group / decifer
  DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…
  ☆20Updated last year
• daler / chromhmm-tools
  Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)
  ☆17Updated 7 years ago
• JEFworks / liger
  Lightweight Iterative Gene set Enrichment in R
  ☆57Updated 8 months ago
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆80Updated last year
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated last year
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / scell
  Single-CELL rna-seq analysis software
  ☆39Updated 7 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆50Updated 4 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• kharchenkolab / hahmmr
  Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
  ☆13Updated last year
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆39Updated 3 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• loosolab / cardiac-progenitors
  Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement
  ☆9Updated 4 years ago