robjohnnoble / demon_modelLinks
A deme-based, spatially explicit model of intra-tumour population genetics
☆21Updated last year
Alternatives and similar repositories for demon_model
Users that are interested in demon_model are comparing it to the libraries listed below
Sorting:
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆90Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆56Updated this week
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Updated last year
- scNMT-seq gastrulation☆42Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Updated 10 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 2 months ago
- Single-cell COPy number Estimation☆16Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Finding gene expression states in scRNA-seq data☆50Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆73Updated last year
- binned motif enrichment analysis and visualisation☆45Updated last week
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆40Updated 9 months ago
- ☆17Updated 7 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Updated 6 years ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- An information-theoretic pipeline for methylation analysis of WGBS data☆24Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- a pipeline for single cell RNA-seq data analysis☆67Updated 2 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- ☆23Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Single-cell copy number calling and event history reconstruction.☆28Updated last year