robjohnnoble / demon_modelLinks
A deme-based, spatially explicit model of intra-tumour population genetics
☆21Updated 10 months ago
Alternatives and similar repositories for demon_model
Users that are interested in demon_model are comparing it to the libraries listed below
Sorting:
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆86Updated 2 years ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 11 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- ☆23Updated 6 years ago
- Repo for scripts for Ludwig et al mtDNA genotyping☆16Updated 6 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- Finding gene expression states in scRNA-seq data☆51Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- binned motif enrichment analysis and visualisation☆43Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- ☆11Updated 2 months ago
- R package of colors for the Buenrostro Lab☆86Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 7 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 10 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 7 months ago
- ☆41Updated 3 years ago
- ☆59Updated last year
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆36Updated 4 years ago
- causal TWAS (cTWAS)☆47Updated 2 weeks ago