robjohnnoble / demon_modelLinks
A deme-based, spatially explicit model of intra-tumour population genetics
☆21Updated 11 months ago
Alternatives and similar repositories for demon_model
Users that are interested in demon_model are comparing it to the libraries listed below
Sorting:
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆90Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated last month
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated this week
- Single-cell copy number calling and event history reconstruction.☆27Updated last year
- ☆23Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- ChromDiff program as described in Yen and Kellis, Nature Communications 2015.☆14Updated 9 years ago
- Population balance analysis☆44Updated 6 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Updated last year
- Exon-Intron Split Analysis (EISA) in R☆17Updated 2 months ago
- Repo for scripts for Ludwig et al mtDNA genotyping☆16Updated 6 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 7 years ago
- a pipeline for single cell RNA-seq data analysis☆67Updated 2 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- An R package to time somatic mutations☆65Updated 5 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Finding gene expression states in scRNA-seq data☆50Updated last year
- CellPhy: accurate and fast probabilistic inference of single-cell phylogenies☆20Updated this week
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆40Updated 8 months ago