dan-landau / IronThrone-GoTLinks
processes GoT amplicon data and generates a table of metrics
☆32Updated 3 years ago
Alternatives and similar repositories for IronThrone-GoT
Users that are interested in IronThrone-GoT are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 10 months ago
- ☆34Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated 3 weeks ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- binned motif enrichment analysis and visualisation☆44Updated last week
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆42Updated 3 years ago
- ☆17Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- GLASS consortium☆42Updated 5 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- ☆38Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆81Updated 3 weeks ago