csoneson / rna_velocity_quantLinks
Evaluation of the effect of quantification choices on RNA velocity estimates
☆27Updated 3 years ago
Alternatives and similar repositories for rna_velocity_quant
Users that are interested in rna_velocity_quant are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆19Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- ☆22Updated 11 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- scover☆23Updated last year
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Exon-Intron Split Analysis (EISA) in R☆16Updated last month
- ☆41Updated 4 years ago
- ☆12Updated last year
- An R package to analyze single-cell V(D)J data☆26Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆20Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆28Updated 6 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆35Updated 2 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year