Evaluation of the effect of quantification choices on RNA velocity estimates
☆27Nov 6, 2021Updated 4 years ago
Alternatives and similar repositories for rna_velocity_quant
Users that are interested in rna_velocity_quant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Nov 29, 2021Updated 4 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆31Apr 12, 2023Updated 2 years ago
- ☆57May 22, 2018Updated 7 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- Precursor microRNA Identification Using Deep Convolutional Neural Networks☆11Oct 31, 2018Updated 7 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Single cell pipelines☆16Dec 16, 2024Updated last year
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- ☆11Jul 22, 2020Updated 5 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆186Mar 11, 2026Updated 2 weeks ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆70Mar 3, 2026Updated 3 weeks ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Mar 11, 2022Updated 4 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated 11 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- Toolkit for Single-Cell Velocity☆59Jul 8, 2025Updated 8 months ago
- ☆16May 25, 2021Updated 4 years ago
- An integrated web-based resource for mapping functional networks of long or circular forms of non-coding RNAs☆10Jul 13, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- ☆12Jul 25, 2019Updated 6 years ago
- ☆16Jan 6, 2025Updated last year
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago