Evaluation of the effect of quantification choices on RNA velocity estimates
☆28Nov 6, 2021Updated 4 years ago
Alternatives and similar repositories for rna_velocity_quant
Users that are interested in rna_velocity_quant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Mar 2, 2024Updated 2 years ago
- ☆57May 22, 2018Updated 8 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 5 years ago
- ☆33Apr 12, 2023Updated 3 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 5 years ago
- Pipeline for analysis of Dropseq single cell data☆11Nov 14, 2024Updated last year
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 6 months ago
- ☆37Nov 29, 2021Updated 4 years ago
- Graph based data integration with UMAP☆11Oct 15, 2020Updated 6 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Single cell pipelines☆17Jun 14, 2026Updated 4 months ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Aug 15, 2026Updated 2 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆29Dec 25, 2023Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆20Updated this week
- LoRTIA toolkit alpha version☆10Aug 19, 2019Updated 7 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- Training Material for Community Reviewers☆15Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Website for the 2021-2022 Caltech class Bi/BE/CS 183: Introduction to Computational Biology and Bioinformatics☆10Mar 11, 2022Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆20Oct 29, 2019Updated 7 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 9 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- Spectral learning for Annotating Chromatin Labels and Epigenomes☆12Dec 15, 2015Updated 10 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GenomeSpy-based mutation plots for R☆17Aug 26, 2026Updated 2 months ago
- Transcript quantification import with automatic metadata detection☆72Oct 25, 2026Updated last week
- ☆13Oct 10, 2024Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 6 years ago
- RNA velocity estimation in Python☆177Oct 7, 2025Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 7 years ago