csoneson / rna_velocity_quantView external linksLinks
Evaluation of the effect of quantification choices on RNA velocity estimates
β27Nov 6, 2021Updated 4 years ago
Alternatives and similar repositories for rna_velocity_quant
Users that are interested in rna_velocity_quant are comparing it to the libraries listed below
Sorting:
- β29Apr 12, 2023Updated 2 years ago
- 𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.β¦β29Sep 9, 2021Updated 4 years ago
- β57May 22, 2018Updated 7 years ago
- β36Nov 29, 2021Updated 4 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-sβ¦β20Nov 17, 2024Updated last year
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genomeβ22Jun 10, 2022Updated 3 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structuresβ12Jun 15, 2023Updated 2 years ago
- Precursor microRNA Identification Using Deep Convolutional Neural Networksβ11Oct 31, 2018Updated 7 years ago
- Analysis code for the TAP-seq manuscript.β11Jun 25, 2021Updated 4 years ago
- Code to reproduce analysis of Milo manuscriptβ15Aug 3, 2022Updated 3 years ago
- β10Jan 8, 2018Updated 8 years ago
- Package to create MOVIE Plotsβ12Oct 31, 2019Updated 6 years ago
- Single cell pipelinesβ16Dec 16, 2024Updated last year
- Scripts to create cartoons of 3D genomesβ12Feb 27, 2024Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimensionβ14Jul 22, 2025Updated 6 months ago
- PROGENY Python implementationβ12Apr 5, 2022Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assayβ87Apr 23, 2025Updated 9 months ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.β12Jun 21, 2022Updated 3 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."β11Feb 1, 2020Updated 6 years ago
- Dorothea package in Pythonβ11Apr 5, 2022Updated 3 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infereβ¦β11Aug 4, 2017Updated 8 years ago
- BioC2020: Where Software and Biology Connectβ12Mar 15, 2023Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)β14Jun 5, 2019Updated 6 years ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune β¦β13May 4, 2022Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seqβ14Nov 24, 2025Updated 2 months ago
- SARS-CoV-2 Deep Sequencingβ14Apr 22, 2020Updated 5 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological β¦β378Oct 3, 2024Updated last year
- Low-dimensional Projection of Single Cell Velocityβ28Aug 26, 2022Updated 3 years ago
- β16May 25, 2021Updated 4 years ago
- Toolkit for Single-Cell Velocityβ59Jul 8, 2025Updated 7 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publicationβ16Feb 1, 2023Updated 3 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental dataβ17Jun 4, 2019Updated 6 years ago
- β21Mar 20, 2017Updated 8 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processingβ181Jan 22, 2026Updated 3 weeks ago
- Toolbox of the Human Neural Organoid Cell Atlasβ29Feb 2, 2026Updated last week
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)β19May 6, 2019Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic frameworkβ16Jan 6, 2016Updated 10 years ago
- Transcript quantification import with automatic metadata detectionβ67Feb 3, 2026Updated last week
- β20Nov 15, 2020Updated 5 years ago